Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2879 ATGTCCACGATGCAAGGCCAAGAAGCAATAGTAAAGGGATCAAAGTGTCAAGACTGTGGGAACCAAGCCAAGAAGGATTGTGCATACGCAAGGTGCAGAACTTGCTGCAAGAATAACGGGTTTAAGTGCCAAACCCATGTCAGAAGCACTTGGATTCCTGTGGATAGAAGGCGCCAGAAAGTGGAGCAGCCACCTCCCACTACTAATCTTCAGGGAGATATTCCTAAAAGGCACAAGCAGAACCCATATTCAAGTTTAGAGGAGTTCAAATTTCCAGCTGTTATGAGTTCCATGGCGTTATTCAGCTGCGTTCAGGTGCGCTCTATGGATGACACGGTTAATGAAATTGCGTATCAAACATCTGTGAACATTGGAGGACATGTATTTAGTGGTCTTCTTTATGATCAAGGCCCCGAACAAAGCTTCAATGCTAGGGGTGACAACAGCTCCATAGGCCCTCTTGAACAACAACACAATCTCAATCTTAGCAGTGCATCAATCCACACCCGTGAAGGTGCAAGTGCAACTGTGCCTCCACTATCGGCCACTGCCCAGGAGCTTTTTTTTCCTCCACCACCGCACCCGTTTCCCCTAGCTTCCTTCAGGCCCGATATGGCATACTTGTCACACCCAAaaccttaa 642 0.4704 MSTMQGQEAIVKGSKCQDCGNQAKKDCAYARCRTCCKNNGFKCQTHVRSTWIPVDRRRQKVEQPPPTTNLQGDIPKRHKQNPYSSLEEFKFPAVMSSMALFSCVQVRSMDDTVNEIAYQTSVNIGGHVFSGLLYDQGPEQSFNARGDNSSIGPLEQQHNLNLSSASIHTREGASATVPPLSATAQELFFPPPPHPFPLASFRPDMAYLSHPKP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2879 213 Pfam Domain of unknown function (DUF702) 13 139 - -
Ssu3g2879 213 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 15 57 IPR006510 -
Ssu3g2879 213 MobiDBLite consensus disorder prediction 56 79 - -
Ssu3g2879 213 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 90 138 IPR006511 -
Ssu3g2879 213 PANTHER BNAC01G23660D PROTEIN 5 202 - -
Ssu3g2879 213 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 5 202 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2879 Ssu-Chr3 83560968 83561906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2879 16 212 C2H2 Transcription Factor Family AT3G51060 40.265 4.96e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ssu3g2879 DUF702 9.6e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2879 - - gsj:114376985 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2879 3 83560968 83561906 Ssu3g2879 3 83560968 83561906 ECH
Ssu5g0094 5 2052141 2053612 Ssu3g2879 3 83560968 83561906 ECH