Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2878 ATGGCTTCCGATTGTTCTCCCCCAAATTTCAACAACGGCCCTTCATCCCCCGACGACTCCCTTTCCAGCCCTATCGCCAACACGTTCTCGTCGCCGGCCGGCAGACGCCGCCGCCGCTCCTCCACCCCCTCCGCATTCGCTACCCCGTCGGAGCGCCGCTCCCGGTTCGCCTCCTCCAATGCCACCCCGACTCCGCGCTCCCGCCAGCGAGGCGCCGGCGCCGGGCGCGTTCCCGCGACGCCCACCTCCACCACCGACGACGTGCCCGCCTCGTCGGACGGCGGCGACGGCTACGACATGGACGACGCCAGGCCCACCTACGTGTGGGGCACCAACATAAGCGTGGAAGACGTGAACGACGCGATTCAGAGGTTCCTGAGGGACTTCAGAGAAGCGTCTTCGTCGCAGGGCGGCGACGACGGCGGGTTGCACCTGCACACCGAAGGGAAGTACGAGAAATTGATCAAACAGGTTATTGAAGTCGAAGGAGATTCTCTGGACGTTGATGCGCACGACGTGTTTGATCACGACCCCGATTTGTACACCAAGATGGTTAGGTACCCCCTCGAGGTGCTCGCGATTTTTGACCTGGTTTTGATGAACATGGTTAGCCGCTTGAAGCCCATGTTCGAGAAGCACATTCAGACTCGGATTTTCAATCTCAGAACCTCAACCTCGATGAGAAATCTGAACCCCTCTGatattgaGAGGATGGTATCGTTGAAGGGAATGATTATAAGGTGTAGCTCAATCATACCGGAGATTAGGGAAGCTATATTTAGGTGTCTTGTGTGCGGATTCTGCTCTGACCCAGTTCCTGTGGAGAGAGGGCGAATAACTGAACCCACTATATGCTTGAGGGAAGAGTGTCAATCCAGGAACTCCATGACACTGGTTCACAACCGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTCCAGGAGACACCTGATGAGATACCAGAAGGAGGCACACCTCACACTGTTAGCTTGCTGATGCATGACAAGCTGGTGGATGCTGGAAAACCAGGTGACAGAGTTGAGGTGACTGGCATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACTCACAGAACTGTTAAGTCATTGTTCAAGACGTATATTGATTGTCTTCACATAAAGAAGACCGATAAGTCCAGGATGCTGGTAGAGGACGCTATGGATGTTGACAATGGCCCAGGCAGAAATGCAAAAGAAGTTCACTTTGACGAAGAAAAGGTGGCTCAACTGAAGGAGCTGTCCAAACAGCcagatatatatgaaagactAACGAAGTCATTGGCGCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAACTTGGCTTCTGGTGCTAGCTTCCGTGGTGATATAAATATTCTTCTTGTTGGTGATCCTGGGACAAGCAAGTCCCAGTTACTTCAGTACATTCACAAACTATCTCCACGTGGTATTTACACCAGTGGAAGGGGAAGCTCTGCCGTTGGATTGACTGCTTACGTAACCAAGGACCCTGAAACAGGGGAAACTGTTCTAGAGAGTGGTGCCCTAGTTTTGAGTGACCGAGGTATCTGTTGTATTGATGAATTCGACAAAATGTCTGACAATGCCAGGAGCATGTTACATGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCTGTGTTGGCTTGTGCAAATCCAAGTGGGTCAAGATACAATCCTCGCTTATCTGTCATTGACAACATACACCTTCCTCCCACACTTTTGTCCAGGTTTGATTTAATCTACTTGATTCTTGACAAGGCTGATGAACAGACTGACAGGCGACTTGCCAAACATATTGTGTCTCTGCACTTTGAGAACCCCGAGAACATGGAGCAAGATGTTTTGGACCTTTCTACATTAACTGATTATGTCAGCTATGCCCGAAAGCACGTACACCCACAGCTTTCTGATGAGGCTGCTGAAGAATTGACTAGAGGTTACGTGGAAATTagaaaaagaggaaattttCCTGGGAGTAGCAAAAAGGTGATAACAGCAACGCCGAGGCAGATTGAGAGTCTGATACGCCTAAGTGAAGCATTGGCTCGGATTCGTTTCTCAGAATGGGTCGAAAAGCGTGATGTAATGGAGGCATTTCGGCTTTTGGAAGTTGCCATGCAGCAGTCTGCAACGGATCACTCTACTGGAACTATAGACATGGATCTTATTACTACTGGAGTTTCGGCAAGTGAAAGGATGAGACGAGAAAGTCTGCTACAAGCAACCCGCAACCTAATCATGGAGAAGATGCAGATTGGGGGACCATCTATGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAGGATACTGGTAGTGAAGTTCATCTTACTGATCTAAGGAATGCAATTGCTACTCTCGCAACCGAAGGATTTGTTACCATGCATGGTGACAGCGTAAAAAGATCGTGA 2511 0.4875 MASDCSPPNFNNGPSSPDDSLSSPIANTFSSPAGRRRRRSSTPSAFATPSERRSRFASSNATPTPRSRQRGAGAGRVPATPTSTTDDVPASSDGGDGYDMDDARPTYVWGTNISVEDVNDAIQRFLRDFREASSSQGGDDGGLHLHTEGKYEKLIKQVIEVEGDSLDVDAHDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRLKPMFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGFCSDPVPVERGRITEPTICLREECQSRNSMTLVHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTHRTVKSLFKTYIDCLHIKKTDKSRMLVEDAMDVDNGPGRNAKEVHFDEEKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALNLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENMEQDVLDLSTLTDYVSYARKHVHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLQATRNLIMEKMQIGGPSMRLLELLEELKKQDTGSEVHLTDLRNAIATLATEGFVTMHGDSVKRS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2878 836 MobiDBLite consensus disorder prediction 1 67 - -
Ssu3g2878 836 Pfam MCM N-terminal domain 121 223 IPR027925 -
Ssu3g2878 836 Gene3D - 745 832 IPR036388 -
Ssu3g2878 836 Gene3D - 227 366 IPR012340 -
Ssu3g2878 836 Pfam MCM OB domain 227 356 IPR033762 -
Ssu3g2878 836 Gene3D - 112 222 - -
Ssu3g2878 836 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 76 835 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu3g2878 836 Pfam MCM P-loop domain 414 636 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu3g2878 836 SMART AAA_5 468 618 IPR003593 -
Ssu3g2878 836 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 740 749 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu3g2878 836 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 249 262 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu3g2878 836 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 300 312 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu3g2878 836 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 588 605 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu3g2878 836 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 442 453 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu3g2878 836 Gene3D - 254 306 - -
Ssu3g2878 836 ProSiteProfiles MCM family domain profile. 426 632 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu3g2878 836 SMART mcm 223 740 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu3g2878 836 SUPERFAMILY Nucleic acid-binding proteins 146 377 IPR012340 -
Ssu3g2878 836 CDD MCM4 429 738 - -
Ssu3g2878 836 Pfam MCM AAA-lid domain 652 738 IPR041562 -
Ssu3g2878 836 Gene3D - 404 744 IPR027417 -
Ssu3g2878 836 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 76 835 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu3g2878 836 MobiDBLite consensus disorder prediction 1 103 - -
Ssu3g2878 836 PRINTS Mini-chromosome maintenance (MCM) protein family signature 579 591 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu3g2878 836 PRINTS Mini-chromosome maintenance (MCM) protein family signature 527 541 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu3g2878 836 PRINTS Mini-chromosome maintenance (MCM) protein family signature 555 568 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu3g2878 836 PRINTS Mini-chromosome maintenance (MCM) protein family signature 606 614 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu3g2878 836 PRINTS Mini-chromosome maintenance (MCM) protein family signature 467 482 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu3g2878 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 437 752 IPR027417 -
Ssu3g2878 836 ProSitePatterns MCM family signature. 535 543 IPR018525 GO:0003677|GO:0005524|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2878 Ssu-Chr3 83547811 83552890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2878 1 835 Core DNA Replication Machinery Family AT2G16440 74.590 0.0 1274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2878 K02212 - gmx:100782586 1505.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2878 3 83547811 83552890 Ssu3g2878 3 83547811 83552890 ECH