Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2877 ATGGGTTCCCCTTTCACAAAGGCTGGTGAGTTTTTCCACTCAGCTCAAAGCCGGGCCCTAGAGCAGCAGAGAGAATATGAATCACGTCATCTGAGTGGTGAATCTATGGAAACACCTTTATTACAGGACCAAGAATTGTCAGGTGATTCATCAAAGCAAGTTAAGTTGGGTTTTTTAGCAGGGCTTGTTCCCAGGGAAAAGTCCATGGTATTTGAGAGAATTTTATTTCGTGCTACTAGAGGAAATGTATTTTTGAGGCTGGCTACTGTTGAGGATCCTGTCACAGACCCTGTTTCTGGAGAAAAGACTGAGAAAAATGTTTTTGCGGTCTTCTATGCCGGCGAAAAAGCAAAAGCCAAGATTCTGAAAATATGTGAAGCCTTCGGTGCTAATCGTTACCCTTTTGCTGAGGAAGTTGGGAAACAAGCTCAAATGATTGCAGAGGTTTCTGGAAGACTTTCAGAATTGAAGACCACTATAGATGCTGGACTACTTCACCGAGATTACTTGCTAAATACTATTGGGGCTCAATTTGAGCAATGGGATGTTTTGGTGAGGAAGGAGAAATCTATTCATCATACCCTGAACATGCTAAGCCTTGATGTGACGAAAAAATGTCTTGTGGCTGAGGGGTGGAGTCCTGTTTTTGCAACTAAGCAGATCCAGGATGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAATGCCATTTTCCAAGTTTTGCATACTAGGGAGTTGCCACCTACCTATTTTCGCACAAACAAATTTACTTCTTCATTTCAAGAAATTATTGACTCATATGGGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTacctttccatttctttttgctGTAATGTTTGGTGATTGGGGGCATGGACTATGTTTACTACTGGCTGCTCTATATTTCATAATCAGGGAGAGGAAACTTTCTAGCCAGAAGCTTGATGACATCACGGAGATGACTTTTGGAGGTCGTTATGTTATTTTGTTGATGGCGCTATTCTCAATCTACACTGGCTTTATCTATAATGAGTTCTTTTCTGTCCCATTTGCAATCTTTGGTCCCTCTGCGTATGAATGTCGTGACCTTTCTTGCAGGGATGCTACAACAGTGGGCCTGATAAAAGTGCGTGACACTTACCCTTTCGGAGTGGATCCTGTATGGCATGGTACACGGAGTGAACTACCATTCCTAAActcattgaaaatgaaaatgtcaATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTGCAATGCTAAATTCTTTAGAAACAGCGTAAATGTGTGGTTCCAGTTCATTCCCCAGATTGTATTTCTCAACAGTCTATTTGGCTACCTATCccttcttattattgttaagtGGTGCACTGGTTCTCAAGCTGATTTGTACCATGTTATGATCTACATGTTCCTAAGCCCGACAGATGATTTGGGTGAGAACCAACTCTTCGTTGGTCAGAAAAATCTGCAGCTTGTGCTTTTGCTTCTGGCTGTTGTCTCTGTGCCCTGGATGCTATTGCcaaaaccttttattttgaagaagCAACATGAAGCTAGGCACGGGGTTGAATCCTATACGCCACTTCAAAGCACAGATGAGAGCTTGCAAGTGGAGGCAAACCATGATTCCCACGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTACATCAACTTATACATACCATAGAATTTGTACTTGGAGCAGTCTCTAATACAGCTTCTTACCTCCGTCTATGGGCCCTTAGTCTTGCTCATTCAGAGTTATCAAGTGTATTCTACGAGAAGGTTCTGATGATGGCATGGGgGTACAATAATGTGATTATCCTTATAGTGGGTCTCATTGTCTTCATTTTCGCTACCGTTGGAGTGTTACTTGTCATGGAAACTCTGAGTGCCTTCTTGCATGCGTTGCGACTTCACTGGGTGGAGTTTCAAAACAAGTTTTATGAGGGCGATGGTTACAAGTTCCACCCTTTCTCGTTCTCATTGCTGGATGATGAGGAATGA 2055 0.4097 MGSPFTKAGEFFHSAQSRALEQQREYESRHLSGESMETPLLQDQELSGDSSKQVKLGFLAGLVPREKSMVFERILFRATRGNVFLRLATVEDPVTDPVSGEKTEKNVFAVFYAGEKAKAKILKICEAFGANRYPFAEEVGKQAQMIAEVSGRLSELKTTIDAGLLHRDYLLNTIGAQFEQWDVLVRKEKSIHHTLNMLSLDVTKKCLVAEGWSPVFATKQIQDALQRAALDSNSQVNAIFQVLHTRELPPTYFRTNKFTSSFQEIIDSYGVAKYQEANPTVYTVVTFPFLFAVMFGDWGHGLCLLLAALYFIIRERKLSSQKLDDITEMTFGGRYVILLMALFSIYTGFIYNEFFSVPFAIFGPSAYECRDLSCRDATTVGLIKVRDTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIVMSYCNAKFFRNSVNVWFQFIPQIVFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFVGQKNLQLVLLLLAVVSVPWMLLPKPFILKKQHEARHGVESYTPLQSTDESLQVEANHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLMMAWGYNNVIILIVGLIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFSLLDDEE 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2877 684 Pfam V-type ATPase 116kDa subunit family 6 677 IPR002490 GO:0033179|GO:0046961|GO:1902600
Ssu3g2877 684 PIRSF ATP6V0A1 3 684 IPR026028 GO:0000220|GO:0046961
Ssu3g2877 684 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 6 684 - -
Ssu3g2877 684 PANTHER VACUOLAR PROTON ATPASES 6 684 IPR002490 GO:0033179|GO:0046961|GO:1902600
Ssu3g2877 684 MobiDBLite consensus disorder prediction 1 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2877 Ssu-Chr3 83521207 83529389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2877 7 684 Primary Pumps ATPases(2) AT2G21410 77.434 0.0 1128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2877 K02154 - gmx:100810062 1249.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2877 3 83521207 83529389 Ssu3g2877 3 83521207 83529389 ECH