Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2874 ATGATGAATATTGAATTGGATGAATCTGATTCCCAACATAGTGATATGGACTGGGAGGAGGAACACTTCTGTGAATTCAACCATGAAGATGATACTGATTCTTCCATCTGCTCAATGGAGGAGACTGACTCAAAACTTGAGTCCTTATCAGAGAGTTCACATGATATATCTGAAATGTGGTTAGATGACATCTTTAGCAGCCATTATTCAGACATTCTGGTTGAAGAGGCAAGACTCCAAGATGCCAAAAAAGAGAACAGCACCAGCTTTGAAGCACAACCTCATTGCACTAATTCTGTCCTGGAAGGCACAAGTGAAAGCATCGAGTTTGTGACTAAAGAAACAGATTATCTGTCCAATGGTATAAGTTCTGAGCATGACCAATCTACTTTGACAGAGGAAGTATTTCAGTATCCGACAAATGCAGAAGATAACaacagagaaaatgaaaaacatgtgGATTATGAGGCCAGTTTCGTCTCAATGGTACTTGATGAAGAGACAGTTGAAAATAGTGAAGTCCACAAAACTAGTGAAAGTTGCGAGATTGATGAGAGCTGTGAAGATAGAAATGCAAGCCTAGAGAATAGTGATGATGGAATTAGCCAGGAGAATCAAATTCACTCATCTGAAGTGCCTGAAGAAAGCACCATTATTGTTCAGGAGCAGAAATTACTGGAGGAAAATCAAGTTAGAGGTAGCAAGTTGCAGAGCACAGGTGGTGAAGAACAGCACACAAGCAAGAATTGGCAATGGGGAACTAAGCGCAAGAGACTTGTGGAAGAGGACGAGGAAATGAGAAAGATCAACCCACGAAAGCCAAATTTCCTGCCCTTCGCTGCTGAGCCAAAACCAGAGAAGGTTGAACTAAAGCACCAAATgatagatgaaagaaaaaatgcaGAGGAATGGATGCTTGATTTCACACTCAGACAAACTGTCATGAGACTTGCTCCAGCAGGGAAAAGGAAGGTGGCATTGCTGGTTGAAGCTTTTGAAACAGTAATGTCAATGCCCATATGCGAAACCCATATGAGAAATGATTCACCCTTTGCTCATGCAAGACCTATTCAAGCATGTAGCTAA 1086 0.3996 MMNIELDESDSQHSDMDWEEEHFCEFNHEDDTDSSICSMEETDSKLESLSESSHDISEMWLDDIFSSHYSDILVEEARLQDAKKENSTSFEAQPHCTNSVLEGTSESIEFVTKETDYLSNGISSEHDQSTLTEEVFQYPTNAEDNNRENEKHVDYEASFVSMVLDEETVENSEVHKTSESCEIDESCEDRNASLENSDDGISQENQIHSSEVPEESTIIVQEQKLLEENQVRGSKLQSTGGEEQHTSKNWQWGTKRKRLVEEDEEMRKINPRKPNFLPFAAEPKPEKVELKHQMIDERKNAEEWMLDFTLRQTVMRLAPAGKRKVALLVEAFETVMSMPICETHMRNDSPFAHARPIQACS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2874 361 MobiDBLite consensus disorder prediction 196 215 - -
Ssu3g2874 361 MobiDBLite consensus disorder prediction 170 195 - -
Ssu3g2874 361 SMART CaM_binding_2 228 337 IPR012417 GO:0005516
Ssu3g2874 361 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 1 361 IPR044681 GO:0005516
Ssu3g2874 361 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 1 361 - -
Ssu3g2874 361 MobiDBLite consensus disorder prediction 170 215 - -
Ssu3g2874 361 Pfam Plant calmodulin-binding domain 248 337 IPR012417 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2874 Ssu-Chr3 83512909 83513994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2874 242 361 Calmodulin-binding Proteins AT2G38800 47.934 9.88e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2874 - - gmx:102670203 582.793