Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2873 ATGCTTCATCCTGGGGGAACTGAGTCTGAGGGAGCTTCAGTCATGAAGGTTTGCTCATATACATACTGTTCTCTTAATGACCATGGTCATGCTCCTTTGCCTCCATTGAAGAGCTTCATGTCAGCAAGGAGGCGTCTTTTGGAGACTCAGAAGAATATAATGCCAGAAGCTATGAGCCCTCAAAGATGGAAGGTGTCCTGTGATACAAAAAACGACTCTGATATTGAGCATGTTGTCTTTGATGGAAAACCGGCATGTGATGAAGCCGACACAGGTAATCCAACAATTACTCCCTTTGCACAAGAAATTGGTATGGATTTCTTTATTGATATCTATGCTAACAAAAACGAAGGATCTGACGAAATGGGAAGATTCAACTCTGTCAAAGACCTTGAGGATCAAGAAGATATCAGTTTTGCAAATGAGGAGAATGGCATTGCATCAGAAGAGGATGGCGTCAAGCAAGTTACTCCAGGCATGACTCACGATCTCCCGAAAGTCCCAGATTAA 510 0.4294 MLHPGGTESEGASVMKVCSYTYCSLNDHGHAPLPPLKSFMSARRRLLETQKNIMPEAMSPQRWKVSCDTKNDSDIEHVVFDGKPACDEADTGNPTITPFAQEIGMDFFIDIYANKNEGSDEMGRFNSVKDLEDQEDISFANEENGIASEEDGVKQVTPGMTHDLPKVPD 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2873 169 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 1 166 IPR044681 GO:0005516
Ssu3g2873 169 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 1 166 - -
Ssu3g2873 169 MobiDBLite consensus disorder prediction 142 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2873 Ssu-Chr3 83512218 83512727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2873 1 84 Calmodulin-binding Proteins AT2G38800 42.157 3.83e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2873 - - gmx:102663818 269.24