Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2869 ATGAGAGAGCGAGTACTGCAAAGCAAGAGATCAGACATGAGAAGTTGTGTGTGTTACGCGCTATTGTTGTTTGTTTCCTTCATATGGTTCCGCGTGGCAGCGTGCTCTTCCCTCAGTGACATGGATGCGCTCCTGAAGCTGAAGGAGTCCCTCAAGGGACACAAAGCCAAAGAAGACGCGCTCCAAGGCTGGGAGATTTCCACGTCGCATTCCGCACACTGTTCCTTTTCAGGTGTAACATGCGACCAAGACCTTCGAGTCGTCGCTCTCAACGTCTCCTTCATCCCACTCTTCGGCCAAATTCCGCCGGAGATCGGACACTTGGACAAACTCGAGAACCTCACCATCGCGCAGGACAACCTCACCGGCTTTCTCCCCAAGGAGCTCGCCAACCTCACTTCCCTCAAGCTCCTCAACATCTCACACAACCTCTTCTCCGGCAAGTTCCCCGGCGAAATCACTCTTCCGATGACCGGACTCGAGGTCCTCGACGTCTACGACAACACATTCACGGGACCGCTTCCGGAAGAACTTGTCAAGCTGGAGAAACTCCGTTACCTCAAGCTCGACGGAAACTACTTTTCCGGCAGCATACCGGAGCGTTACTCGGAGTTCAAGAGCTTGGAGTTTTTGAGCTTAAGCACCAACAGTCTCTCGGGGAAGATTCCAAGGAGTTTGTCTCGGTTGAAGACGCTGACGTACCTCAAACTCGGATACAACAACGCTTACGAAGGCGGAATCCCGCCGGAGTTCGGCACCATGAAATCCCTGATATTTCTGGACCTCTCTAGCTGCAACCTCAGCGGCGAGATTCCGCCGAGCCTGAGCAATTTGACAAATCTTGACACCTTGTTCCTGCAAATGAATAACCTCACCGGAACCATTCCGCCGGAGCTCTCCGCTATGGCGAGCCTCATGTCACTGGATCTCTCCATCAACAGCCTCACCGGGGAGATCCCGGAGAGTTTCTCTCAGCTCAAAAACCTAACTCTCATGAACTTCTTCCACAACAACCTCCGCGGCACCGTTCCGTCCTTCGTCGGGGAGCTTCCCAATCTGGAAACGCTTCAGCTCTGGGAGAACAACTTCTCCTTCGTGCTCCCGCAGAACCTGGGGCAAAACGGCAAGTTCATTTTCTTCGACGTCACGAAGAACCACTTCACCGGGTTCATCCCTCCGGGTTTGTGCAAAAGCGGAAGGCTACAAACCTTCATGATCAACGATAACTTCTTCCGCGGTCCAATCCCCGGGGAGATTGGTAACTGCAAGTCTCTTACTAAAATCCGTGCCGCGAATAACTACCTTGACGGCGAGGTTCCGTCTGGGATTTTTAAACTGCCTTCCGTCACGTTAATCGAGCTGTCCAATAACCGTTTTAACGGCGAACTGCCTTCCGAGATTTCCGGCGATTCTCTCGGGATGCTCATTCTTTCCAACAACTTATTCTCGGGGAGAATTCCTCCAGCGTTGAAAAACTTGAGGGCACTGCAGAATCTGTTTCTCGACGCGAACGAGTTCGTTGGGGAAATTCCTGGTGAGGTTTTTGAGTTACCAGTGCTGACGAAGCTCAACATAAGCGGCAACAATCTCACGGGACCAATCCCAACGACGTTGACTCGCTGCGTTTCACTCACTGCCGTTGACCTCAGCCGGAACGTGCTCGTTGGAGAGATTCCCAAGGGGATTAAGAACCTCGCGGACTTGAGCATTTTCAATGTGTCGAGAAACCAAATAACAGGGCCAGTCCCTGACGAGATTCGCTTCATGATTAGCCTCACCACCTTGGATCTCTCCTACAACAATTTCAACGGCAAGGTTCCCAGCGGGGGTCAGTTCTTGGTCTTCAGCGACAAGTCGTTTGCGGGGAACCCCAACCTCTGCTACCCCCACTCTTGCCCTAATTCCTCGATGTTCAACGACGGCTTGAGGAAGAGGCGTGGGCCCTGGAGTTCGAAATCGACGAGGGTGATAGTCATCGTGATTGCACTCGGCACCGCCGCGCTgctggtggtggtgacggtgtaCATGGCGAGGAGGAGGCAGCTGCACCGGGCGATGACATGGAAGCTGACGGCGTTTCAGCGGCTGAGCTTTAAGGCGGAGGACGTGGTGGAGTGTCTGAAGGAGGAGAACATAATAGGGAAAGGAGGGGCGGGGATCGTGTACCGCGGGTCCATGCCAAACGGAATTGACGTGGCGATAAAGCGGTTGGTTGGGGCGGGGAGTGGGAGGAACGACTACGGGTTCAAGGCGGAGATAGAGACGCTGGGGAAGATAAGGCACAGGAACATAATGAGGCTTTTGGGTTACGTGTCGAATAAGGAGACGAACTTGCTGCTGTATGAGTACATGCCGAATGGGAGCTTGGGGGAGTGGCTGCATGGGGCCAAGGGTGCGCACTTGAGGTGGGAAATGAGGTACAAGATTGCGGTGGAAGCGGCCAAGGGACTCTGCTATTTGCACCATGATTGCTCCCCTCTTATCATTCACAGGGACGTCAAGTCCAATAATATATTGCTCGATGCCGACTTCGAGGCCCATGTCGCCGATTTTGGGCTTGCCAAGTTCTTGTACGACCCAGGCGCCTCTCAGTCCATGTCCTCCATCGCTGGCTCCTACGGCTACATTGCTCCAGAGTATGCTTACACTTTGAAAGTGGACGAGAAAAGCGACGTGTATAGCTTTGGCGTGGTGCTGTTGGAGCTGATAATAGGGAGGAAGCCAGTGGGGGAGTTTGGCGATGGGGTGGACATCGTTGGATGGGTCAATAAAACCAGATTGGAACTCTCTCAGCCGTCCGATGCTGCGTTAGTGATAGCAGTGGTGGACCCCCGGCTTAGTGGGTATCCATTGACAAGTGTCATTCACATGTTCAACATAGCTATGATGTGTGTTAAAGAAATGGGGCCCGCCAGGCCCACCATGAGGGAAGTCGTTCATATGCTCACAAATCCTCCTCCCTCTACCCCTCCAAACCTAATTAATCTCTAG 2991 0.5279 MRERVLQSKRSDMRSCVCYALLLFVSFIWFRVAACSSLSDMDALLKLKESLKGHKAKEDALQGWEISTSHSAHCSFSGVTCDQDLRVVALNVSFIPLFGQIPPEIGHLDKLENLTIAQDNLTGFLPKELANLTSLKLLNISHNLFSGKFPGEITLPMTGLEVLDVYDNTFTGPLPEELVKLEKLRYLKLDGNYFSGSIPERYSEFKSLEFLSLSTNSLSGKIPRSLSRLKTLTYLKLGYNNAYEGGIPPEFGTMKSLIFLDLSSCNLSGEIPPSLSNLTNLDTLFLQMNNLTGTIPPELSAMASLMSLDLSINSLTGEIPESFSQLKNLTLMNFFHNNLRGTVPSFVGELPNLETLQLWENNFSFVLPQNLGQNGKFIFFDVTKNHFTGFIPPGLCKSGRLQTFMINDNFFRGPIPGEIGNCKSLTKIRAANNYLDGEVPSGIFKLPSVTLIELSNNRFNGELPSEISGDSLGMLILSNNLFSGRIPPALKNLRALQNLFLDANEFVGEIPGEVFELPVLTKLNISGNNLTGPIPTTLTRCVSLTAVDLSRNVLVGEIPKGIKNLADLSIFNVSRNQITGPVPDEIRFMISLTTLDLSYNNFNGKVPSGGQFLVFSDKSFAGNPNLCYPHSCPNSSMFNDGLRKRRGPWSSKSTRVIVIVIALGTAALLVVVTVYMARRRQLHRAMTWKLTAFQRLSFKAEDVVECLKEENIIGKGGAGIVYRGSMPNGIDVAIKRLVGAGSGRNDYGFKAEIETLGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGAHLRWEMRYKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLYDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRLELSQPSDAALVIAVVDPRLSGYPLTSVIHMFNIAMMCVKEMGPARPTMREVVHMLTNPPPSTPPNLINL 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2869 996 Gene3D Ribonuclease Inhibitor 39 156 IPR032675 -
Ssu3g2869 996 Gene3D Ribonuclease Inhibitor 511 634 IPR032675 -
Ssu3g2869 996 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 17 989 - -
Ssu3g2869 996 PANTHER UNNAMED PRODUCT 17 989 - -
Ssu3g2869 996 SMART serkin_6 707 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2869 996 Gene3D Transferase(Phosphotransferase) domain 1 784 987 - -
Ssu3g2869 996 Pfam Leucine Rich Repeat 256 278 IPR001611 GO:0005515
Ssu3g2869 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Ssu3g2869 996 Gene3D Ribonuclease Inhibitor 157 241 IPR032675 -
Ssu3g2869 996 SUPERFAMILY Protein kinase-like (PK-like) 697 982 IPR011009 -
Ssu3g2869 996 Pfam Leucine rich repeat N-terminal domain 39 82 IPR013210 -
Ssu3g2869 996 SUPERFAMILY RNI-like 90 412 - -
Ssu3g2869 996 ProSiteProfiles Protein kinase domain profile. 707 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2869 996 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515
Ssu3g2869 996 Pfam Protein tyrosine and serine/threonine kinase 708 981 IPR001245 GO:0004672|GO:0006468
Ssu3g2869 996 SMART LRR_typ_2 493 517 IPR003591 -
Ssu3g2869 996 SMART LRR_typ_2 589 612 IPR003591 -
Ssu3g2869 996 SMART LRR_typ_2 446 470 IPR003591 -
Ssu3g2869 996 SMART LRR_typ_2 278 302 IPR003591 -
Ssu3g2869 996 SMART LRR_typ_2 205 229 IPR003591 -
Ssu3g2869 996 SMART LRR_typ_2 350 374 IPR003591 -
Ssu3g2869 996 Gene3D Ribonuclease Inhibitor 399 510 IPR032675 -
Ssu3g2869 996 SUPERFAMILY L domain-like 382 630 - -
Ssu3g2869 996 Gene3D Phosphorylase Kinase; domain 1 671 783 - -
Ssu3g2869 996 Gene3D Ribonuclease Inhibitor 242 398 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2869 Ssu-Chr3 83482372 83485995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2869 33 994 Receptor kinase-like Gene Family AT1G75820 62.551 0.0 1226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu3g2869 PK_Tyr_Ser-Thr 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2869 K00924 - gmx:732625 1657.5