Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2865 atggttCGTGCCCATCTGAGAATGACTTCTCCTTACAATATTCCAAACTTCAGTCTTGAAACTCTTACCTTTCAAGGCCAACCGTTAGAAAAAGAAGTGGGGTGCTCTTACTCTTTGCTTGTCGTTCTCATAAATATGAAGAACAAGAGAAATTTTTCTGAATTCGTGTCAGAGTTAATAACTCTGACCGATGAGGTTGCTTCTTTTGCTAAAAATCCTGAAATTGAGATAGAGGATGCTTTTACTGAGTTTGCCATGTTGGTTGAGAAATTTGCACCAATCTTCAATGATTTGAGAGACAACAGCACAATCATGGACAAACCAGCTATTAGAAAGTCATTGGAATCTCTTATGAATGAGCTTAGCCAGGCTAAAGCTTTGATCCGAAGCTCCTCTTTGAAAGAGCCCATCAACCGAATTGAGGACATAGCACATGATCTTGGTCGATCACTAGGCATGCTGCTTGTGGCCAGTCTTGAAGTGTCCACAGATTTTAGAGAAAAGATTGGTACATTGCAAAAACAGCTGATGAGTGTGAGATTTGGTGGGAATATGAGTCTAACTTCAAGTTCAATATCAAGAGTTGTCAATGAAGTGAAGGTGGGAAGGGAAATAGAAGAGGAATTGATTAATGTTACTAGCGATGATGTTCTACTACAGCTTAAGAATGGTGATGCTGAAGAATTTGCAGTTGCACTTTTAAGACTGAAGAATTTCTCTTCGGGAGGAAAATTGGATAGTGGTGTAATTAATTTGGAAGCTGttgttttcattcttttcaatCGTTTATGTTCATGTAAGGCAGTCAATAGGCTGACCATCATTCAATTGCTACGAAGTATTGCTTTGGGAAATGATGTGACGAAGGAGAAGATGGCAAATATTGAGTTTTTATCAGCAGTGGTGAAGTCTTTAACAAGAGACACTGAAGAGAGGAGGGAAGCAGTGGGACTGTTGCTAGAACTGTCTGACCTTCCTGCAGTTAGACGGAAGGTTGGAAGAATTCAGGGGTGTCTTGTTATGTTAGTTTGTATCCTGAATGGAGTTGACCCTGTTGCTTCACGCGATGCAGCAAAGTTGTTGGATATACTATCCAATAATACTCAAAATGCACTTCTTATGGCTGAGGCTGGTTACTTTGGGCCGCTATTGAAGTATTTGAATAAAGGTTGTGACATGAACAAGATCGTCATGGCAACAGCACTTTCTAGGCTGGTGCTTACTGATCATAGCAAACTTACCCTTGGACAAGATGGGGCAATTGAGACCCTTGTGAAAATGTTCAATTCTGGGAAACTTGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAATCTTTCCAGCCTGACAGAAAATGTGCAACTTTTGATCGGAACTGGAATTGTAGGATCTCTGCTGCAACTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTACGGGAGCCTGCATCAGCCATTCTCGCAAGAATTGCTGAGTCAGAAAATGTTCTTGTTGACCAAGGTGTGGCTCATCAGATGCTCTCACTTTTGCATCTTTCCAGCCCTGTGGTTCAAGGCCATCTATTAGAAGCTCTAAATAGCATTGCTGCCCATCCTTGTGCTTCAAAAgtgagaagaaaaatgaaggaaaaaggtGCACTTCAGCTAATTTTACCCCTTctgaaggaaacaaaaattaaaataaggagtAAGGCATTGAATTTGCTGCATACTCTCTCCGAAGATCTAACAGATGAGTTGACTGCACATTTTGATGAAACTCATCTTTTTGACATTGTTAATATTGTGTTATCATCAACATCAGATAGTGAAAAGGCCGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTGGTGATAAAAAAGTGACAGATGTACTGAAGAGAGCAAACTTGTTGCCCATTTTGGTTTCCATTATGGATTCAGGTAACTCAAACTCACCCACAAGAAGTAGCTTGATGGAGAGTATTGCAGGCGTTGCAATCCGGTTCACAACTTCCTCTGACAAGAAACTGCAACTTCTTTCAGCAAAACATGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAAGTGGTTCAGCAATCACAAAATTCAGAGCCGCAACCGCTCTTGCTCAACTGTCACagaattctctctctcttaggAGAACTAGGAAGTCAAGGCAGGTGCCGTTTGTCCCCTTATCCAAATACTGGAAGATAAGGATGGGGAAGCAGGTGGAAGCGGCATTGAACGCCCTTTCAACTCTATTGCAAGATGAAATCTGGGAACGTGGTGCCAATTGCATAGCCAAATTGTCAGGTGTACAAGCTATTGTAAACATATTAGAAGCAGGTGATGTGAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACACAGAACGAAATATGGAGAATTCGCTCAGGTGGTTCTTATTGATCTGGTGGCACAGAGGAGTGATTCTCGATTGAGGTCAACAGTTGCAAAAGTTTTGGCAGTGCTGGAGCTCCTACTAGTTCAATCAAGTTATTTTTGA 2535 0.3992 MVRAHLRMTSPYNIPNFSLETLTFQGQPLEKEVGCSYSLLVVLINMKNKRNFSEFVSELITLTDEVASFAKNPEIEIEDAFTEFAMLVEKFAPIFNDLRDNSTIMDKPAIRKSLESLMNELSQAKALIRSSSLKEPINRIEDIAHDLGRSLGMLLVASLEVSTDFREKIGTLQKQLMSVRFGGNMSLTSSSISRVVNEVKVGREIEEELINVTSDDVLLQLKNGDAEEFAVALLRLKNFSSGGKLDSGVINLEAVVFILFNRLCSCKAVNRLTIIQLLRSIALGNDVTKEKMANIEFLSAVVKSLTRDTEERREAVGLLLELSDLPAVRRKVGRIQGCLVMLVCILNGVDPVASRDAAKLLDILSNNTQNALLMAEAGYFGPLLKYLNKGCDMNKIVMATALSRLVLTDHSKLTLGQDGAIETLVKMFNSGKLESKLSALNALQNLSSLTENVQLLIGTGIVGSLLQLLFSVTSVLMTLREPASAILARIAESENVLVDQGVAHQMLSLLHLSSPVVQGHLLEALNSIAAHPCASKVRRKMKEKGALQLILPLLKETKIKIRSKALNLLHTLSEDLTDELTAHFDETHLFDIVNIVLSSTSDSEKAAAVGILSNLPVGDKKVTDVLKRANLLPILVSIMDSGNSNSPTRSSLMESIAGVAIRFTTSSDKKLQLLSAKHGVIPLLVKLLSSGSAITKFRAATALAQLSQNSLSLRRTRKSRQVPFVPLSKYWKIRMGKQVEAALNALSTLLQDEIWERGANCIAKLSGVQAIVNILEAGDVKVQEKALWMLERIFRVEEHRTKYGEFAQVVLIDLVAQRSDSRLRSTVAKVLAVLELLLVQSSYF 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2865 844 Gene3D - 403 722 IPR011989 -
Ssu3g2865 844 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 738 844 - -
Ssu3g2865 844 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 47 722 - -
Ssu3g2865 844 Coils Coil 114 134 - -
Ssu3g2865 844 Gene3D - 726 840 IPR011989 -
Ssu3g2865 844 Pfam Armadillo/beta-catenin-like repeat 676 707 IPR000225 GO:0005515
Ssu3g2865 844 Gene3D - 231 402 IPR011989 -
Ssu3g2865 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
Ssu3g2865 844 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 47 722 - -
Ssu3g2865 844 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 738 844 - -
Ssu3g2865 844 SUPERFAMILY ARM repeat 382 798 IPR016024 -
Ssu3g2865 844 SUPERFAMILY ARM repeat 217 407 IPR016024 -
Ssu3g2865 844 SMART arm_5 534 574 IPR000225 GO:0005515
Ssu3g2865 844 SMART arm_5 408 448 IPR000225 GO:0005515
Ssu3g2865 844 SMART arm_5 666 708 IPR000225 GO:0005515
Ssu3g2865 844 SMART arm_5 755 795 IPR000225 GO:0005515
Ssu3g2865 844 SMART arm_5 449 492 IPR000225 GO:0005515
Ssu3g2865 844 SMART arm_5 367 407 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2865 Ssu-Chr3 83445549 83449497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2865 271 831 U-box Gene Family AT1G76390 27.329 2.75e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2865 K08332 - gmx:102659538 1216.06