Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2863 ATGGCTTCCTCGAGTGGAACATCTTCAGGGTCGTCATCCCTGCTTCAGAACTCTGGTTCGGAGGAGGACTTGCAGGCGGTGATGGAtcagagaaagagaaagagaatgatatCAAATCGCGAATCTGCGCGGCGATCCCGCATGAGGAAGCAGAAGCACTTGGACGATCTCGTCTCGCAAGTGGCTCAGCTGAGAAAGGAGAATCAGCAGATTCTCACGAGCGTCAACATCACCACGCAGCAGTACCTGAGCGTCGAGGCCGAGAACTCGGTGCTGAGGGCTCAGGTGGGGGAGCTTAGCCACAGGTTGGAGTCTCTGAACGAGATCATCGACGTGTTGAATGCCAGCACTGCGGGTTTTGGAGCATCCACCACGTTCGTTGAGCCAGCGAATAGCTTCTTCAACCCGCTGAACATGGGGTATCTGAACCAGCCTATTGTGGCCTCTGCGGACATATTGCAGTATTGA 468 0.5235 MASSSGTSSGSSSLLQNSGSEEDLQAVMDQRKRKRMISNRESARRSRMRKQKHLDDLVSQVAQLRKENQQILTSVNITTQQYLSVEAENSVLRAQVGELSHRLESLNEIIDVLNASTAGFGASTTFVEPANSFFNPLNMGYLNQPIVASADILQY 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2863 155 Pfam bZIP transcription factor 31 76 IPR004827 GO:0003700|GO:0006355
Ssu3g2863 155 CDD bZIP_plant_GBF1 32 82 IPR045314 GO:0003700|GO:0006355
Ssu3g2863 155 SUPERFAMILY Leucine zipper domain 31 83 IPR046347 GO:0003700|GO:0006355
Ssu3g2863 155 PANTHER BZIP TRANSCRIPTION FACTOR 1 153 - -
Ssu3g2863 155 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 153 - -
Ssu3g2863 155 SMART brlzneu 27 91 IPR004827 GO:0003700|GO:0006355
Ssu3g2863 155 Coils Coil 47 74 - -
Ssu3g2863 155 MobiDBLite consensus disorder prediction 1 24 - -
Ssu3g2863 155 MobiDBLite consensus disorder prediction 1 51 - -
Ssu3g2863 155 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 92 IPR004827 GO:0003700|GO:0006355
Ssu3g2863 155 MobiDBLite consensus disorder prediction 25 51 - -
Ssu3g2863 155 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700|GO:0006355
Ssu3g2863 155 Gene3D - 29 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2863 Ssu-Chr3 83410086 83410553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2863 25 155 bZIP Transcription Factor Family AT4G34590 57.554 7.48e-50 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu3g2863 bZIP_1 2.4e-10 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2863 3 83410086 83410553 Ssu3g2863 3 83410086 83410553 ECH