Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2857 ATGCCTCTTATAAAAAACCCTAGGGTTTCTAATGTTCTGTGCTTGCGCCTCTGCCTGAAAGAAAAGAGTGAAATCCTTCTCTTTTGCCTCTCACAAGTCACAACTGCTTTCATGGCTCCAAAGAAGGACAAGGCTCCTCCACCTTCCTCCAAGCCCGCCAAATCTGGCGGTGGCAAGCAGAAAAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAATAACATGGTGATGTTTGATCAGGCCTCTTATGACAAGCTCCTCTCTGAAGCTCCCAAATACAAGCTCATCACTCCTTCCATTCTCTCTGATCGTTTGAGgATTAATGGATCACTTGCAAGGAAGGCGATAAGAGAATTGATGGCTAGAGGTTCTATCAGGATGGTGTCTGCCCATGCAAGTCAGCAAATTTATACCAGGGCAACAAACACCTAG 438 0.4566 MPLIKNPRVSNVLCLRLCLKEKSEILLFCLSQVTTAFMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVMFDQASYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2857 145 MobiDBLite consensus disorder prediction 39 73 - -
Ssu3g2857 145 Gene3D - 58 145 - -
Ssu3g2857 145 PANTHER BNAA04G12260D PROTEIN 24 145 - -
Ssu3g2857 145 PANTHER 40S RIBOSOMAL PROTEIN S25 24 145 IPR004977 -
Ssu3g2857 145 Pfam S25 ribosomal protein 45 142 IPR004977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2857 Ssu-Chr3 83218024 83220050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2857 38 144 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 91.589 3.21e-54 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2857 K02975 - gmx:100789867 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2857 3 83218024 83220050 Ssu3g2857 3 83218024 83220050 ECH