Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2849 ATGGCAAGTTTGCTTGCTCTGAAGATCGGTCCCCTTAGTCTCTCCTCAAAAAAGATAGGAGAAGACATCACAAAGGAGAATGCAAAGGATAAGAAGGGATCGAGGGTCACTGTGAAGCTCATCTTGCAAAGTTGTCAGGCGAAGGTCACGGTGGTTCCCTCTGTAGCGGCGCTCGTCGTTGAGGCTCTTAAGGAACCTAAACGTTGTTGCAAGAAGATGAAGAATGGAGAATCTGCCTAG 240 0.4792 MASLLALKIGPLSLSSKKIGEDITKENAKDKKGSRVTVKLILQSCQAKVTVVPSVAALVVEALKEPKRCCKKMKNGESA 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2849 79 PANTHER 60S RIBOSOMAL PROTEIN L12 2 75 - -
Ssu3g2849 79 PANTHER 60S RIBOSOMAL PROTEIN L12 2 75 IPR000911 GO:0003735|GO:0005840|GO:0006412
Ssu3g2849 79 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 3 64 IPR036796 -
Ssu3g2849 79 Gene3D - 1 63 IPR036796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2849 Ssu-Chr3 83093507 83093746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2849 2 75 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 71.622 8.99e-28 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2849 K02870 - bvg:104898694 92.8189