Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2845 ATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCGACCTGTTCGGACTTGACAGTGTTGGAAAGGCAAAGGGAAGCAACCACGAAGTGGCAACAACATCACGAGAACCACCAACCGTGCTTCTCTGCGACGGAGCTCAACGTTAACGgcttctcctcttcttctcaTAGTGAGGGGTTGGTGATGATGTGCGGTGATTCCGCGCTCGGGGAGGTGTTGGCTCACTCAGTGAAACCCGACCCGGGTGGGTGGCCCGACTTGGACACCGGATTCggatattcttcttcttttgtgcCTGCCGTTTCACGAACTTGTAGCGGAGACGGAGACTTGGTTTCGGCCGCGAAGAACGTGGCGAGTGGGAAGGAAAACGCTAAGAAGAGGAAGGCTCAGAACTCCAAGGTTGTTGCGGAGAGTGATAACAAGGACAAGAGATTGAAAGTAAGTGCCGAGGAAGGGGAATCCAAAGCCACGGAGCAAACCAGCAAGAAGAATGGCAAATCCGATGTGAATAGAAACAACGGGGAAACCTCTGCGGATACTTCCAAGGATAATTCCAAAGGCTCCGAGGTTCAAAATCAAAAGCCTGATTACATTCATGTCCGAGCACGTCGTGGTCAAGCCACCGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAGAAGATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAATTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCCATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACATTGACGAACTGTTTGCCAAAGAGGTGTTTCCCTCTTGTGCTCAAAGTTTTCCGAACATAGGGATGCCATCGGATATGACTACCAACCCCGCGTATCTTCAGTTCAATTCAGCACAGCAACTTGTTTCGTGCTGTGGTggattaataaataacataggGATAAGCCCTCCGAATATGGGACTCCGAAGGAACATTAGCACTACCTCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTCAAATTCTACCCTCCACAAATTGGGAAGCTGATTTCCAAAACTTTTACAATGTTGCTTTTGATCAAGGGCGAACAGCATCCTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAGATGGAGATGTAA 1227 0.4531 MLHCLNTSGNLGATCSDLTVLERQREATTKWQQHHENHQPCFSATELNVNGFSSSSHSEGLVMMCGDSALGEVLAHSVKPDPGGWPDLDTGFGYSSSFVPAVSRTCSGDGDLVSAAKNVASGKENAKKRKAQNSKVVAESDNKDKRLKVSAEEGESKATEQTSKKNGKSDVNRNNGETSADTSKDNSKGSEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFPSCAQSFPNIGMPSDMTTNPAYLQFNSAQQLVSCCGGLINNIGISPPNMGLRRNISTTSVPLPETFLDSSCFTQILPSTNWEADFQNFYNVAFDQGRTASFPSQPFTGLVEASNLKMEM 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2845 408 MobiDBLite consensus disorder prediction 172 194 - -
Ssu3g2845 408 MobiDBLite consensus disorder prediction 122 171 - -
Ssu3g2845 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 277 IPR036638 GO:0046983
Ssu3g2845 408 MobiDBLite consensus disorder prediction 120 215 - -
Ssu3g2845 408 CDD bHLH_AtBPE_like 198 283 - -
Ssu3g2845 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 258 IPR011598 GO:0046983
Ssu3g2845 408 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 24 389 IPR024097 GO:0006355
Ssu3g2845 408 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 24 389 - -
Ssu3g2845 408 Pfam Helix-loop-helix DNA-binding domain 212 259 IPR011598 GO:0046983
Ssu3g2845 408 MobiDBLite consensus disorder prediction 198 215 - -
Ssu3g2845 408 Gene3D - 205 279 IPR036638 GO:0046983
Ssu3g2845 408 SMART finulus 214 264 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2845 Ssu-Chr3 83034352 83037121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2845 9 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 36.641 3.83e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g2845 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2845 - - gmx:100794256 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2845 3 83034352 83037121 Ssu3g2845 3 83034352 83037121 ECH