Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2844 ATGGCCTCAGGCTCTCTCAGCCAACAAAAGCAATCTGACTCCTCTTGGACACCAAAACAGAACAAGCTGTTTGAAAAAGCACTTGCAAAATATGACAAGGATACCCCGGACCGGTGGGTGAATGTAGCCAAAGCAGTTGGTGGCAAATCTGCTGATGAAGTTAAGAGACACTATGAAATCCTCTTGGAGGATCTGAGACACATAGAGTCTGGCCGTGTTCCTCTTCCCAAATACAAGTCCACAGGAAGCAGCACCAATGTTGATGAAGAAGAGAGGCTTCTGAAGTATCTTAAGCTGAATTGA 303 0.4554 MASGSLSQQKQSDSSWTPKQNKLFEKALAKYDKDTPDRWVNVAKAVGGKSADEVKRHYEILLEDLRHIESGRVPLPKYKSTGSSTNVDEEERLLKYLKLN 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2844 100 CDD SANT 15 62 IPR001005 -
Ssu3g2844 100 SMART sant 12 64 IPR001005 -
Ssu3g2844 100 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Ssu3g2844 100 Gene3D - 6 75 - -
Ssu3g2844 100 PANTHER PROTEIN RADIALIS-LIKE 3 1 81 - -
Ssu3g2844 100 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Ssu3g2844 100 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Ssu3g2844 100 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Ssu3g2844 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2844 Ssu-Chr3 82990734 82992114 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu3g2844 Myb_DNA-binding 9.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2844 - - gmx:100798314 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2844 3 82990734 82992114 Ssu3g2844 3 82990734 82992114 ECH