Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2843 aTGGCTTCTGCAGATGTTGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACAACGATGCCCTGGAGAAAGCCTTTTCTCCCTACGGCGACATTGTTGAATCGAAGATTATCAACGATCGTGAGACTGGAAGATCGAGGGGGTTCGGATTTGTGACCTTTGCCTCGGAGCAGTCAATGAAAGATGCGATCGAAGGGATGAACGGCCAGAACCTTGACGGCCGTAACATCACTGTGAACGAAGCTCAATCCCGCGGGAGCCGCagtggcggcggcggcggcggcggttACGGAGGTGGCGGTGGATACAGCCGCGGTGGTGGTGGATATGGTGGTGGCGGATATGGTGGTCGTCGTGAAGGTGGATACAATCGTAacggtggaggtggaggtggaggtggaggttaTGGCGGTGGTAGAGACCGTGGTTACGGTGACGGTGGATCACGCTACTCTCGTGGTGATGTTGAGTTCCGATGCTTTGTTGGTGGGCTCGCTTGGGCCACAGACAACGATGCCCTCGAGAAAGCGTTCTCTCTGTATGGTGACATCGTTGAATCGAAGATTATCAACGATCGTGAGACTGGAAGGTCGAGAGGGTTCGGATTTGTGACCTTTGCCTCGGAGCAGTCAATGAAAGATGCGATTGAAGGGATGAACGGTCAGAACCTTGACGGCCGTAACATCACCGTGAACGAGGCGCAGTCCCGCGGCAGCCGCGGTGGAGGCGGTGGCGGCTTCGGAAGTGGCGGTGGATACAGCCGCGGTGGTGGTGGATATGGTGGTGGCGGATACGGTGGTCGTCGTGAAGGTGGATACAACCGTAACGGTGGAGGCTATGGCGGTGGCGGTTATGGCGGTGGCAGGGACCGTGGTTATGGTGATGGTGGCAGGGACCGTGGATACGGTGACGGTGGATCACGCTATTCTCGCGGTGGTATTGACGGCGGTGTTGAGGGAAGCTGGTGA 975 0.5354 MASADVEFRCFVGGLAWATDNDALEKAFSPYGDIVESKIINDRETGRSRGFGFVTFASEQSMKDAIEGMNGQNLDGRNITVNEAQSRGSRSGGGGGGGYGGGGGYSRGGGGYGGGGYGGRREGGYNRNGGGGGGGGGYGGGRDRGYGDGGSRYSRGDVEFRCFVGGLAWATDNDALEKAFSLYGDIVESKIINDRETGRSRGFGFVTFASEQSMKDAIEGMNGQNLDGRNITVNEAQSRGSRGGGGGGFGSGGGYSRGGGGYGGGGYGGRREGGYNRNGGGYGGGGYGGGRDRGYGDGGRDRGYGDGGSRYSRGGIDGGVEGSW 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2843 324 MobiDBLite consensus disorder prediction 281 324 - -
Ssu3g2843 324 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 155 - -
Ssu3g2843 324 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 156 324 - -
Ssu3g2843 324 Gene3D - 144 256 IPR012677 -
Ssu3g2843 324 Gene3D - 2 119 IPR012677 -
Ssu3g2843 324 SUPERFAMILY RNA-binding domain, RBD 160 268 IPR035979 GO:0003676
Ssu3g2843 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Ssu3g2843 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 231 IPR000504 GO:0003723
Ssu3g2843 324 SMART rrm1_1 161 234 IPR000504 GO:0003723
Ssu3g2843 324 SMART rrm1_1 9 82 IPR000504 GO:0003723
Ssu3g2843 324 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Ssu3g2843 324 PANTHER GEO13361P1-RELATED 1 155 - -
Ssu3g2843 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 238 IPR000504 GO:0003723
Ssu3g2843 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Ssu3g2843 324 PANTHER GEO13361P1-RELATED 156 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2843 Ssu-Chr3 82953071 82960492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2843 10 296 Eukaryotic Initiation Factors Gene Family AT1G71770 23.009 6.50e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2843 - K13195 ccaj:109800369 166.777