Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2842 ATGCTTTTTTCATGTCAAAAATACAACCTCTACTTTCCCTGCTCCTCCGTTCCCCTGCGCAACCCAACAACATGCACCATTTTCAATTGTCAAAACCCAAACGAGCATCACGCCATTCTCCGTAAACACAATTCCAAATCCACAGCGTATCTCCTTCACCACCTCTCCCACAAGGATGGGGCTGATCACCAGCCCATTCCCAAGCCCAAACCCAGCGAGCTTCAGGACCCAATGCCCCACGAAGAAAAAGTGAAGGTTTTGGAGCTTTCCCTCGTGAGGAAAAGGACCCCTCAGTTCCCTGGCTCCATCTACGCTCAGTCCCCTAGCGACTCCGATGTGGGCTCTTCTCTCCCCCCTCTCCGCACTCTGTTTCAATCGAGTGCTGACACTGATGATAGGGACAACGAGGAAGAGGAGAAGGAGATGATAATGCGCGCTCTGGAGATTCGCAGGAAGGTCACTGAAGAGGTTTTCAAAGAAGCCATGCGAAAGGGAAAGTTTGGAATCACTTATGCTACCAATTTGGTTGGCAAGTTATCCGGTTTCATCGATTACATCATGATTGAAGCTGCTAACTTGAAAAGATTGCCCAAATATTCCAACTCCACCTTCAATTTACGCGCCAAAATTATCATTGATGACTCTAAAGTTGTGCCACTTATTAGATGGTTGAAGCATAATGCACTGTCGTATCCTCGGATAGCTAAGCTCATTTTGATGTCAAGAGGAAAACCCGAGGCCATAAGGAGTTTTGTGGAGTGGTTGAAATCGGTGCGTGTGAAAGGAGAGTTTCTCGGTGTTGTAATGTTGAATGCTGGAGAGAATATTTTGCAGCGCAGCCATGAGGAGCTGGATGAGATTGTTCTGTATTTGGAGTCCAACGGAGTCAGGGGGGATTGGATGGGTTATGTCATTAGTCGTTGTCCGCAGTTATTGTCTTACAGCTTAGAAGAGGTGAAGACTCGTGCGCAGTTCTACCTTGATATGGGTTTAAATGAGAAGGATTTTGGCACAATGGTTTTTGATTTTCCTAAAGTACTTGGTTACTATACTCTGGAAGAAATGAATGCAAAGGTTAATTACTTAAAGGAATTTGGGCTTCAAAGTAAGGATGTTGGCAGATTGCTTGCATTTAGGCCACAATTGATGGCATGCAGCATTGATGAACAATGGAAGCCTCTTGTTAAGTATCTGTATTATTATGGGATCACTCGAGATGGTATGAGGAGAATGCTCACCATTAAACCAATGGTCTTTTGTGCTGACTTGCAGATGACTATTGTGCCAAAGGTACGGTTTTTTGAGGACATGGGGGTTCGAAAGGATGCGATTGGCAACATGCTTGTGAGGTTTCCTCCTCTACTCACTTACAGCCTGCACAAGAAGATTAGACCAGTGATCATATTCTTGTTGACCAAAGCTGGAGTCAGTGAGAAAGATATTGGCAAGGTTGTTGCTCTTGGACCTGAGCTCTTGGGATGCAATATAGTACATAAGCTTGatgtaaatgtaaaatattttttgtctcttgGCATACATCTTCGGCAATTGGGTGAGATGATTGCTGATTTCCCAATGCTGCTCAGATACAATATTGATGTCCTTCGTCCCAAGTATATTTATTTGCGGAAAACCATGGTCCGGCCTTTGCAAGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTTGAGGGTCGAATTATCCCAAGACACAAGGTTCTAGTGGAGAATCAGATTAATATTAAGCTGAGATACATGTTGGCTAGCACTGACGAAGAATTCAACAAAATGGTCAAGGCTATAATTAGAAAGCGCCAAAGATTTGAGTCTGCTGTCACAAATGAGGATACTACTCATCCCCAATCTGTTATTACTGGGGATATTACTACACCCCAggcataa 1905 0.4336 MLFSCQKYNLYFPCSSVPLRNPTTCTIFNCQNPNEHHAILRKHNSKSTAYLLHHLSHKDGADHQPIPKPKPSELQDPMPHEEKVKVLELSLVRKRTPQFPGSIYAQSPSDSDVGSSLPPLRTLFQSSADTDDRDNEEEEKEMIMRALEIRRKVTEEVFKEAMRKGKFGITYATNLVGKLSGFIDYIMIEAANLKRLPKYSNSTFNLRAKIIIDDSKVVPLIRWLKHNALSYPRIAKLILMSRGKPEAIRSFVEWLKSVRVKGEFLGVVMLNAGENILQRSHEELDEIVLYLESNGVRGDWMGYVISRCPQLLSYSLEEVKTRAQFYLDMGLNEKDFGTMVFDFPKVLGYYTLEEMNAKVNYLKEFGLQSKDVGRLLAFRPQLMACSIDEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCADLQMTIVPKVRFFEDMGVRKDAIGNMLVRFPPLLTYSLHKKIRPVIIFLLTKAGVSEKDIGKVVALGPELLGCNIVHKLDVNVKYFLSLGIHLRQLGEMIADFPMLLRYNIDVLRPKYIYLRKTMVRPLQDLIEFPRFFSYSLEGRIIPRHKVLVENQINIKLRYMLASTDEEFNKMVKAIIRKRQRFESAVTNEDTTHPQSVITGDITTPQA 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2842 634 MobiDBLite consensus disorder prediction 613 634 - -
Ssu3g2842 634 PANTHER CGI-12 PROTEIN-RELATED 63 619 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 MobiDBLite consensus disorder prediction 614 634 - -
Ssu3g2842 634 MobiDBLite consensus disorder prediction 100 126 - -
Ssu3g2842 634 MobiDBLite consensus disorder prediction 100 137 - -
Ssu3g2842 634 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 63 619 - -
Ssu3g2842 634 Pfam mTERF 353 595 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 Pfam mTERF 231 363 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 SMART mt_12 373 404 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 SMART mt_12 482 513 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 SMART mt_12 337 368 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 SMART mt_12 518 548 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 SMART mt_12 302 332 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 SMART mt_12 550 581 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 SMART mt_12 445 477 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 SMART mt_12 409 440 IPR003690 GO:0003690|GO:0006355
Ssu3g2842 634 Gene3D Transcription termination factor 3, mitochondrial 379 602 IPR038538 -
Ssu3g2842 634 MobiDBLite consensus disorder prediction 58 77 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu3g2842 mTERF 1.8e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2842 K15032 - zju:107426883 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2842 3 82933784 82937088 Ssu3g2842 3 82933784 82937088 ECH