Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2837 ATGACGGAGTCCGGCCCCGCCGCAACCCCAAGCGTGAGCTTGAAGCTTCTCGTGTTAGTTGCCATTTTAGTTGTCTTCGCGGTGGTGATTCTGCTTCTGATCTTCTTCCTCTGCTTCCGCGGGAGCCGGAGCTGCAAGAAGCGGAAGTTGGCGGCGAAGCACAGCTCCGGGAGCATCCCTCTGGTGTCGAAGGAGATCATGGTGGTTAAGGCGCTGGATCTCACCCCTGCGACGCCGAGCGAGGTTGATGACGTGGACGGTGATCCGAAGAGGGAGGCGGAGATCAAGGTTGAAATTGAAGCGATGAGGAAGAGCGAGGTGTCAGTGTCGATGGAGGATCCGAATATAGGGTGGGGCCGCTGGTACACCATTAGGGAAGTGGAACTCGCCACTCGTGGATTCGCGGAAGGGAATGTTATTGGGGAAGGAGGGTATGGGGTTGTCTATAGAGGAGTTGTGCAAGATGGTTCCATCGTGGCTGTCAAGAATCTTCTTAACAACAAGGGTCAAGCTGAGAAAGAGTTTAAGGTGGAGGTTGAAGCTATTGGAAAAGTAAGACATAAGAATTTGGTTCGTTTGGTAGGATATTGTGCGGAAGGTGCTCGAAGGATGCTTGTTTATGAGTATGTTGACAACGGAAACTTGGAACAGTGGCTGCATGGTGATGTAGGACCAAGTAGCCCCTTGACATGGGATATTCGAATGAGAATTGCTATTGGGACTGCAAAAGGGCTAGCCTATCTGCATGAAGGCTTGGAACCCAAAGTTGTGCACCGCGATATAAAATCCAGTAACATTCTTTTGGATAAAAACTGGAACGCCAAAGTATCAGATTTTGGACTCGCCAAGCTCTTAGGATCTGAGATAACTCATGTGACTACGCGTGTAATGGGAACATTCGGATATGTTGCACCTGAGTATGCAAGCTCGGGTATGCTTAATGAGCGCAGTGATGTTTATAGCTTTGGAGTGCTTCTCATGGAGATAATCACAGGAAGAAGCCCCATTGATTATTCAAGACCACCTGGAGAGATGAATTTGGTTGATTGGTTTAAGGCAATGGTAGCAAGTCGTCGCAGTGAGGAGCTAGTTGATCCTTTAATTGAGATTCCCCCCTCTCCAAGATCTTTGAAGCGAGTTTTACTGATTTGTCTGCGCTGTATAGACTTGGATGTCGTTAAGCGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGACAGATGATTTCCCCTTTCGTTCTGAGCTACGTACAGTTAGAGACAAAGATCCTGCGCCTTCTCATGCAGATGTTTCCATTAAAGTTCCTTATCCACCAAAGCATGCAGAAATCATAGAAAAATCAAGATGGAGATGA 1356 0.4771 MTESGPAATPSVSLKLLVLVAILVVFAVVILLLIFFLCFRGSRSCKKRKLAAKHSSGSIPLVSKEIMVVKALDLTPATPSEVDDVDGDPKREAEIKVEIEAMRKSEVSVSMEDPNIGWGRWYTIREVELATRGFAEGNVIGEGGYGVVYRGVVQDGSIVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPSSPLTWDIRMRIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEITHVTTRVMGTFGYVAPEYASSGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKAMVASRRSEELVDPLIEIPPSPRSLKRVLLICLRCIDLDVVKRPKMGQIVHMLETDDFPFRSELRTVRDKDPAPSHADVSIKVPYPPKHAEIIEKSRWR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2837 451 SMART serkin_6 134 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2837 451 SUPERFAMILY Protein kinase-like (PK-like) 111 407 IPR011009 -
Ssu3g2837 451 PANTHER OS01G0323000 PROTEIN 7 451 - -
Ssu3g2837 451 ProSiteProfiles Protein kinase domain profile. 134 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2837 451 PANTHER RECEPTOR-LIKE KINASE 7 451 - -
Ssu3g2837 451 Pfam Protein kinase domain 136 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2837 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Ssu3g2837 451 ProSitePatterns Protein kinases ATP-binding region signature. 140 162 IPR017441 GO:0005524
Ssu3g2837 451 Gene3D Transferase(Phosphotransferase) domain 1 210 416 - -
Ssu3g2837 451 CDD STKc_IRAK 140 406 - -
Ssu3g2837 451 Gene3D Phosphorylase Kinase; domain 1 91 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2837 Ssu-Chr3 82893160 82896782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2837 114 406 Receptor kinase-like Gene Family AT4G02010 47.811 9.11e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Ssu3g2837 Pkinase 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2837 - - gmx:100305442 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2837 3 82893160 82896782 Ssu3g2837 3 82893160 82896782 ECH