Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2802 ATGGAGGATTACGCGAGCAGCGACGACGATTACCATTACTCCTCCGACCAGGAGGATTCCGTCGACGCAATCGAAAACGACGACCAAGATTACGCTTTGCTTTCTTCCAAGGGTCCCACTACTCAGGTGATTACGAAGGAATCACTGCTAGTTGCACAGAGGGAGGATTTGCGCAGAGTGATGGACATGCTATCAGTGAGAGAGCAACATGCCCGTACGCTGCTTATTTTTCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAAGGGAAATCATTTCTCTTTGCTGAAGCTGGTGTTAGCGTGGATGAACATCGTGACTCTGACTTATCCGCTCCTTCTACATTAATGTGCTATATCTGCATGGAGGATGTTCCTAGTGATGAAACAACGAGAATGGACTGTGGTCACTGCTTTTGCAACTCCTGTTGGATAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGCAACACAAGTGCAACTCCATTTGTGATGAAGCTGTCGTAAGAACTCTACTCAGTATAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTGCTTGAATCTTATATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAGCTGTGCGAGGTAGAATGTTCATGTGgttacaattttgttttaggTGCTTGTGTGAAGCACACTCCCCGTGTTCATGTTTGA 765 0.4379 MEDYASSDDDYHYSSDQEDSVDAIENDDQDYALLSSKGPTTQVITKESLLVAQREDLRRVMDMLSVREQHARTLLIFHRWDVEKLFAVYVDKGKSFLFAEAGVSVDEHRDSDLSAPSTLMCYICMEDVPSDETTRMDCGHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLSIKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGYNFVLGACVKHTPRVHV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2802 254 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 245 IPR031127 GO:0004842|GO:0016567
Ssu3g2802 254 MobiDBLite consensus disorder prediction 1 25 - -
Ssu3g2802 254 SUPERFAMILY RING/U-box 117 204 - -
Ssu3g2802 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 207 IPR013083 -
Ssu3g2802 254 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 245 - -
Ssu3g2802 254 ProSiteProfiles TRIAD supradomain profile. 117 254 IPR044066 -
Ssu3g2802 254 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Ssu3g2802 254 Pfam IBR domain, a half RING-finger domain 192 247 IPR002867 -
Ssu3g2802 254 SMART ibrneu5 192 245 IPR002867 -
Ssu3g2802 254 SUPERFAMILY RING/U-box 192 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2802 Ssu-Chr3 82330125 82331785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2802 61 250 ARIADNE family AT2G16090 66.495 9.90e-86 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2802 K11968 - gmx:100783343 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2802 3 82330125 82331785 Ssu3g2802 3 82330125 82331785 ECH