Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2792 ATGATGGCTCCTTCTCAGCCACCTCATTGGGCCCCATCTCCCTCTCCAACAACACCAATCCTCAACAAGTCTTTCTTGCCCCCGCCGTCGACGTCACCGGCGGTTGACTTCAGCCCGCCGTTGATAGCAATGGTCGTGGTCGTCGCCGCCGCGTTTCTCGTCGTAACCTACTCCCGCCTGATCGCGCGCCATCTCAGCCCGCTCATCCACCGCCTCCTTCGGCGGTTCCGAAGGCGGCGCTTCCTGCCGTCGTCCGTCGGCGACCTGGAGTCGCTCCCTTACGAATCACCGTTGGATGGGCCACACGTGTTCTCTCCCTACGGTTTAGACGAAACCGTGATCAAGACGATTCCGTTCTCGCTCTACACCGCGAAATACGACACGCGTTTTGAAGAGTCTCGCAACGACTGCGCCGTTTGCTTGCTTGAATTCGAAGATGAAGACTACGTTAGAACGCTCCCCGTTTGCTCACACACGTTCCACTTGGACTGCATCGACGCGTGGCTTCGCTCGCACGCTAACTGCCCACTCTGCCGCGCCGGAGTGCTCTGCGCCGATTCACCTTTCACTCCGATGATGGCCGCGAGAATCCGACCAAGCCTCGACGACGACACAATTCTCCGCCGCATCAGCATAGACCATCTCCTCGATCCGCCGCCAACAGCGCCGGTGGAGGCGATATCCGCCGTGCCGGAGATCACGCCCTGCGTCGACGACCACTCTCCGAGGAGGAACCAGAACCACGTTAATTCAGAGGACCGTTTCAACGCTAGGGATTTTCTGCTGAAGAGGTCTTATTCGTTTGGGTTTGAACGGAGTCTCGCGTCGGAGAGGATGGTGATGGAGCCGGCCACGGCTTCGCCGTGGCGGTACCGGAGAGGGAGTAGTAGTTTCTGGAGCAAGAGGCCTTCGCCGTTTGGGTCTTTGGGGAAGCCGAGGGTGTTTTCGTTTCGGTATTATAGGGGGATGAAGTCGCCGTTCTTCCGGCGGAGGGGTTTTTTTTCCGTTGTCGGAGTCCAGCGTGAGGTACGGCGGCGGCGGGAGTTCGTCGCGGCGGAGCAAGTCGATAGCGAGTCCGATGTTTCTGCGGTCGTCGGGGTTGGCCGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGGGATCCCGAGGCGCTGCTGTCGCCGGAGAGGTTTAA 1176 0.6029 MMAPSQPPHWAPSPSPTTPILNKSFLPPPSTSPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLSPLIHRLLRRFRRRRFLPSSVGDLESLPYESPLDGPHVFSPYGLDETVIKTIPFSLYTAKYDTRFEESRNDCAVCLLEFEDEDYVRTLPVCSHTFHLDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDDTILRRISIDHLLDPPPTAPVEAISAVPEITPCVDDHSPRRNQNHVNSEDRFNARDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFSVVGVQREVRRRREFVAAEQVDSESDVSAVVGVGRGGVLVEPAEVRGSRGAAVAGEV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2792 391 SUPERFAMILY RING/U-box 121 184 - -
Ssu3g2792 391 Pfam Ring finger domain 135 179 IPR001841 -
Ssu3g2792 391 CDD RING-H2_PA-TM-RING 136 179 - -
Ssu3g2792 391 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 336 IPR044675 -
Ssu3g2792 391 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 336 - -
Ssu3g2792 391 SMART ring_2 137 178 IPR001841 -
Ssu3g2792 391 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Ssu3g2792 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 183 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2792 Ssu-Chr3 82202784 82203959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2792 30 332 C3H Transcription Factor Family AT3G18930 50.751 1.85e-76 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2792 - K19041 gmx:100806115 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2792 3 82202784 82203959 Ssu3g2792 3 82202784 82203959 ECH