Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2775 ATGTTGGATAGCTCGATGACTACTGGTGTCAAGAAATACCCTGACTTCTTCAAAGTCTTCCTTCCAGAACAAAGCTCTGAAAGAATGCTTATCCCAAACGGTTGGGTGAAGTTGACACACTTACAAGGAAGGATCCCTGAGGATGTTATCCTCAGAAATCGTAGTGGGAGAGTTTGGGGTGTCAAAACTCGTCGTATtggagagaaattatatttcGATGACGGGTGGAAggttttcaaagaagaaaaCTGTTTAGGAAAAGCAGATTTTCTGGTTTTTAATTATGATGGGAGTAAGGAGTTCATGGTCTTAATCCTTGACATAGCAACACAGTGTGAAAAGCCTGTGGTGAAGTTGGAGAATGAGGGGAATGTAGAAGAGCAAGCAGCAGCGCAAGAAGTTGAGGAGGCAAAGATAGCAGAGGAGGAAGAACATGAACAAGTTGAGGACTGTGTCATGGAGGACGAAGAAGACAGCAAGGATGAGGACTATGGTGATGACAGTGATTCTGATGATGATCAGTATACAGAGACGGAAGAAGAGAATGAAGAAGAATACAGTGCTGGAAACATAGGTCGAAGTTATCTTAGAGCTTGCAAAAGGGAGACTGCATCAAGTTCCAACCCCAAGGCTGAAGTTCCTCTTGAAGACTATGAATTTGATCCAGAGATGTATATTCAGCCGGAGAATCCATTCTTTGAAGCAAAACTCTATAAAAATAGACGCAACGAGTTGCACATTCCAGGAAATGTCATTAAAGACTTCTCCCTTACTTTTCCAGAGAAGATTACCCTTTTATGTTGCCAATGCAACCAACGCCAGGATATTCAAAGAAATGAATTACGAGACTATCATCTCAGCTTGGTACAACAGACACCGGTTCGCAAGAAATATTTGGAAGTGACAGGAGAAGTGTGTAGGTGGATAGATGGTCGAATATGTATCAAGGGTTGGTTAAGCTTTTGTAGAAGGAACAAGATGACAGTAAATGATGCATGCCTCTGTGAAATTATATCAGGGGAAGACCAGATAGTAAGAATATTGCGGGTGCACGTACTTGGTGCTAGGAGGGGATGA 1077 0.4113 MLDSSMTTGVKKYPDFFKVFLPEQSSERMLIPNGWVKLTHLQGRIPEDVILRNRSGRVWGVKTRRIGEKLYFDDGWKVFKEENCLGKADFLVFNYDGSKEFMVLILDIATQCEKPVVKLENEGNVEEQAAAQEVEEAKIAEEEEHEQVEDCVMEDEEDSKDEDYGDDSDSDDDQYTETEEENEEEYSAGNIGRSYLRACKRETASSSNPKAEVPLEDYEFDPEMYIQPENPFFEAKLYKNRRNELHIPGNVIKDFSLTFPEKITLLCCQCNQRQDIQRNELRDYHLSLVQQTPVRKKYLEVTGEVCRWIDGRICIKGWLSFCRRNKMTVNDACLCEIISGEDQIVRILRVHVLGARRG 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2775 358 MobiDBLite consensus disorder prediction 140 189 - -
Ssu3g2775 358 SUPERFAMILY DNA-binding pseudobarrel domain 306 349 IPR015300 -
Ssu3g2775 358 Gene3D - 8 112 IPR015300 -
Ssu3g2775 358 ProSiteProfiles B3 DNA-binding domain profile. 14 109 IPR003340 GO:0003677
Ssu3g2775 358 PANTHER B3 DOMAIN-CONTAINING 11 355 - -
Ssu3g2775 358 Gene3D - 219 354 IPR015300 -
Ssu3g2775 358 Coils Coil 124 151 - -
Ssu3g2775 358 SMART B3_2 16 109 IPR003340 GO:0003677
Ssu3g2775 358 MobiDBLite consensus disorder prediction 140 185 - -
Ssu3g2775 358 CDD B3_DNA 14 107 IPR003340 GO:0003677
Ssu3g2775 358 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Ssu3g2775 358 SUPERFAMILY DNA-binding pseudobarrel domain 12 107 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2775 14 353 B3 DNA Binding Superfamily AT3G06160 27.429 7.69e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu3g2775 B3 1.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2775 - - gmx:100811445 390.963