Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2774 ATGCCGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTCTCCAACCCAACCAACTGAGGCTTCCAGATAATTTTATGAGGAAATATGGGGGTGAACTTTCTTCAGTTGTTAGCCTATCTGTTCCTGATGGTAGTATCTGGCGTGTAGGATTGAAAAAGGCAGACAACAAATATTGGTTCCTTGATGGTTGGCAAGAATTTGTTCAACGCTATTCCATTGGTGTTGGATACTTGTTGGTATTCAGATATGAAGGAAAGTCATCTTTCAATGttcatgtttttaatttggCTACTTCTGAGATAAACTATCAATTGGCCATGCGAAGCAGTAATGAGGGGCCTTACTTCGCAAATCGTCctaaattttttgaagaaatggAAGATGAAGATTCCATTGAAATATCGGATTCATCCCCTTCCCACCTTACTCCCAGCTCATTGCAAAGTAAAGCTCTTGCTGGACCAGTAGATAAAATGACGCCTGGAAAGGGTTATACACCTCCGGCATTGCAGAATCTGTTCAATGGATCTAAACTTAATTGCATAAACTGGGGAGAGGGTGGGAATGCCCATTCTTCGAGAAGTGCCAGTTCACTAGATAATCGGTTGACCAGAGACATAGGACTTCAGTTTAATGCAGTTGAGTTTAAAAGATCTACTGAAGAATTGAAATTGCGTGCTTCCATCGAGGAAAGGCTTAAAAAAACTGCAAGAAAGAAGCGGAAATCAGATGGCCAGGAACCCTCTTCTGCTGAACATGAAGAGGAGGTAGAAATGCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACagcagaagaaagagaaagggcCATCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTGGTCCTGCGGCCCTCCTATTTATATAGGGGATGCATAATGTATCTGCCGTCCTGCTTTGCAGAAAAGCATTTGAATGAAGTTTCAGGGTTTATTAAACTTCAGATCTCTAATGGGAGACAGTGGCCTGTTCGGTGCCTTTATAGAGGAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGGGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAGAATGAAAGAAGTAGTGCTGCAGGTTACCGTCTTTCGTGTTACTGAGGATGTGGGATTGTTGAGCCCTCCTTTGCAGCAGAACCAAAACATGGGCTCACCTAAACTGTTGAACACTCCCTTGCAGCAACCCCTCACTTCAACTAAACTGTCTAGAAATTAG 1293 0.4122 MPHPSFHKLLLPSTLQPNQLRLPDNFMRKYGGELSSVVSLSVPDGSIWRVGLKKADNKYWFLDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVHVFNLATSEINYQLAMRSSNEGPYFANRPKFFEEMEDEDSIEISDSSPSHLTPSSLQSKALAGPVDKMTPGKGYTPPALQNLFNGSKLNCINWGEGGNAHSSRSASSLDNRLTRDIGLQFNAVEFKRSTEELKLRASIEERLKKTARKKRKSDGQEPSSAEHEEEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTVFRVTEDVGLLSPPLQQNQNMGSPKLLNTPLQQPLTSTKLSRN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2774 430 MobiDBLite consensus disorder prediction 241 257 - -
Ssu3g2774 430 SMART B3_2 6 98 IPR003340 GO:0003677
Ssu3g2774 430 SMART B3_2 297 392 IPR003340 GO:0003677
Ssu3g2774 430 PANTHER B3 DOMAIN-CONTAINING 1 420 - -
Ssu3g2774 430 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 420 - -
Ssu3g2774 430 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Ssu3g2774 430 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Ssu3g2774 430 MobiDBLite consensus disorder prediction 407 430 - -
Ssu3g2774 430 MobiDBLite consensus disorder prediction 129 149 - -
Ssu3g2774 430 Gene3D - 274 395 IPR015300 -
Ssu3g2774 430 SUPERFAMILY DNA-binding pseudobarrel domain 290 391 IPR015300 -
Ssu3g2774 430 ProSiteProfiles B3 DNA-binding domain profile. 297 392 IPR003340 GO:0003677
Ssu3g2774 430 MobiDBLite consensus disorder prediction 236 257 - -
Ssu3g2774 430 CDD B3_DNA 295 390 IPR003340 GO:0003677
Ssu3g2774 430 Gene3D - 1 98 IPR015300 -
Ssu3g2774 430 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Ssu3g2774 430 Pfam B3 DNA binding domain 300 390 IPR003340 GO:0003677
Ssu3g2774 430 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2774 Ssu-Chr3 82059657 82062558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2774 1 396 B3 DNA Binding Superfamily AT3G18990 53.000 1.10e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu3g2774 B3 9.5e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2774 3 82059657 82062558 Ssu3g2774 3 82059657 82062558 ECH