Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2773 ATGACAATGAGAGACTTTTCAGTTCATCCCAATGCTTTAATCTTGCAAGGAAACAACAGGGAGAGGTGGCAGATGGATCATCATCAGGACAACCCATTCTTCTTCGTTATCATCAAGAACACCAAGCAACTGAAAGTCCCAAAGAAATTTCTGAAGTATTTGAATGAAGGCTTGTCGAGTAATGCAATTCTTATTGGCCCTTCTGGTGACCAGTGGCAAGTAACTATTTTGAAGAAAGGAAATGGCATGTATTTGCAAAATGGTTGGCCACAATTTCTGACAAGCAACTCGGTGATACTTGATGAGTTCTTGCTTTTTACATATCATGTTGGGAACTGCTTCCATGTTCAAATTTTTGGTAAGAATGGATGTGAGAGGCTATTCCTCAAAGAAACAAGACAAGAACAAGCTGCCACCCCAAGTTTGGCGAGGACAAAGAAGAGTACACAAAGAAAAACTTCTGCCGGTTCATTCCTCCATGAATCCAAGTCTTGTCAAAAAGATCTGCCTTTCATCAACAAAGGCACACTTTCTAATGGAtgtgaaataaagaaaacaagacTAGAACAAGCTGCCACCCCAAGTTTGGAGAGGACAAAGAGGAGTAGACAAACAAAAACTTCTGCCAGTTCATCACACCTCCACAAATCAAAGACTTGTCAGGAAGATCTGCCTTTCAGCAACAAAGGCTCACTTTCTAATGAATGTGAGAGGTTATGCctcaaaaaaccaaaacaagaacAAGCTGCCACCCCAAGTGTGGTGaggaaaaataagaattctGCCGGTTCATCACACCTCCATGAATCGAAGTCTTGTCAAGAAGATCTGCCTTTCAGCAACAAAGTCTCACTTTCTAAGGAATTCCCAAAGCCTCAGATTTCAGTTAAAGTTGAAAGCTCAGAAGCATGCAAATTGGCCAGTCTTTTACCTCTTGCAATCCTCATTGGAAGCACCTCATGA 963 0.3936 MTMRDFSVHPNALILQGNNRERWQMDHHQDNPFFFVIIKNTKQLKVPKKFLKYLNEGLSSNAILIGPSGDQWQVTILKKGNGMYLQNGWPQFLTSNSVILDEFLLFTYHVGNCFHVQIFGKNGCERLFLKETRQEQAATPSLARTKKSTQRKTSAGSFLHESKSCQKDLPFINKGTLSNGCEIKKTRLEQAATPSLERTKRSRQTKTSASSSHLHKSKTCQEDLPFSNKGSLSNECERLCLKKPKQEQAATPSVVRKNKNSAGSSHLHESKSCQEDLPFSNKVSLSKEFPKPQISVKVESSEACKLASLLPLAILIGSTS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2773 320 PANTHER B3 DOMAIN-CONTAINING 27 250 - -
Ssu3g2773 320 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 27 250 - -
Ssu3g2773 320 Pfam B3 DNA binding domain 40 121 IPR003340 GO:0003677
Ssu3g2773 320 Gene3D - 23 124 IPR015300 -
Ssu3g2773 320 MobiDBLite consensus disorder prediction 138 159 - -
Ssu3g2773 320 MobiDBLite consensus disorder prediction 247 275 - -
Ssu3g2773 320 MobiDBLite consensus disorder prediction 251 268 - -
Ssu3g2773 320 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Ssu3g2773 320 SMART B3_2 34 122 IPR003340 GO:0003677
Ssu3g2773 320 MobiDBLite consensus disorder prediction 189 223 - -
Ssu3g2773 320 SUPERFAMILY DNA-binding pseudobarrel domain 28 124 IPR015300 -
Ssu3g2773 320 CDD B3_DNA 32 119 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2773 32 133 REM Transcription Factor Family AT3G06220 30.476 1.71e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu3g2773 B3 3.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2773 - - gmx:100815555 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2773 3 82036159 82038322 Ssu3g2773 3 82036159 82038322 ECH