Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2762 ATGGAAGACCATTTTTCCCCTAAGGGAAAGGAAATTGACTATTGCACACCTCCTGGGGCTCAGTTGAATGAGGAATCAACACCGGTAGATGGTGGAATGAAAAATTCAGCTTCAGAGGACATGTTTAGCAACTTCTCAGAGCTCCTGAACTTTGATACCTATGCTGGTTGGAGCAATAGCCCATCCATGACTGATCAGAGTTTGGCTAATGTGTTTTCATCATTTTCCTCAGCACCATATCCACCACCAGATGGATTGAATTTAGTGGAACATAGCAATGGTCCATTCTTTATGACAGAAGTTAGTGAAATTCACAATGGTATGGACATCCAACTTGGGTTCTTAGATGATGCAAATAACTTAgattcaaaacaaaaacacaatgttCCATCTCAGCAACTTAATACCTCAGACATGTGCAATTACATAATCTCAAGGTCATCAGGTCGGTCACTTGATGATAGAATGCTGAGGGCTTTGTCCTTCTTTATGGAATCAGCTGATGGGGGAATGTTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAACAACCTTATTTGCTAGACCCAAAGCTTGCAGGTTATCGTGAAGTGTCAAGGGCATTTACATTTTCTGCAGAAGGAAAGCCAGGATCATGTCCTGGGCTTCCTGCTCGCGTGTTTATATCGCATGTTCCTGAATGGACCTCCAATGTTGGTTACTACAATAAAACTGAGTACTTAAGGTTGGAGCATGCAATGAATCATGAGATTCGTGGATCGATTGCTCTTCCTATATCTGATGTGCACTCTCAAGTGCCATGTGCCGTGTTGGAACTAGTCACCACAAAGGAAAAGGCTAATTTTGACAGAGAATTAGAAATTGTTTCTCATGCACTCCAGCTTGTAAATTTAAGGACTACTATGCCTCCACGACTTCTTCCCCAGTGTCTATCAAGTAACAAAAGAGCTGGTCTAACGGAGATAATTGATGTGTTACGCGCCGTGTGTCATGCACACAGATTGCCACTGGCACTGACATGGATTCCCTGTTGCTACAGTGAGGGAATAGGAGATGAAACTGAGAGAATACGAATTAAAGAGGGTCATACAAGTTCTAATGAAAAATGTGTATTATGTATTGAAGAATCAGCTTGCTATGTAAATGATGGAGCGGTAGGAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCGAATCATCCATTCTTCTATACTGATGTGAAGACATATGATGTTAGTGAATATCCCCTTGTTCATCACGCGCGAAAATATAACTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACCTATACCAATAATGATGATTACATATTAGAATTCTTTCTGCCTGTCAATATGACAGGGGGTTCAGAACAGCAACTATTGTTAGACAATCTCTCAGGTACCATGCGGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAGTTAACAGGAATGGAAGGCTCCCAAGCTGGGTTTCCAAAGGAAAAGGTCCCAGGTTTTTTTCCTATGTCCAGGAGAAACTCTCAGATAGCATTCATAAATGATGACCGTGATTCGGTCCAAAAGATGTCCTTGAAGGCATCTAACCTGAGAAAGAATGGAATTGAAGCTGCTCATAGCCAGGAAATGAATGGATCAAGAAAGCAGGTTGAGAAAAAGAGAAGTGCAGTGGAGAAGAATGTTAGTTTGAGTGTTCTCCAACAATACTTTTCCGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGCGTTTGCCCAACAACTCTAAAAAGGATATGCAGACAACATGGAATTTCAAGATGGCCATCCCGCAAGATCAATAAGGTGAATCGTTCATTGAAGAAGATACAGGCTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGCTGAAGTTTGATCCTTATACTGGGGGGTTTATAGCCGGAGGATCAATCATGAAGGAAACTGAAGCACATAAATATCTTCTGTTTCCTGAGAAAAGTGATGTGAAAGACCCTAAGCCTGCAACACAAAAAGCAGTCTCAGTAAATTCAGCACCTGGCAGCACTGATGAGAATTCAGCAATTAAGTTGGATGATGCTGATGGTGTTTGTTTGATGGGAAACCAGCTTGTGCACTCAACAAGTGTGCTTATATCTAATACCAGTGAGGGAGAATTGAAGAAAGACAATGCTTCTTCTGATGATTGTTGTGAAAATTCAAAATCAGTGGCCATGAATGATGGATCATGTCAGAAAGCCTCCCTTTGGACCAAGACTAAGGATTGTCCTGAACAAACTTGTTTGGAGGTGGAAAACTCTATCCGTGATATTGCTTGTCATAGTTCCATATCCTTGGTTACTGATGAGGTTGAAATTGGTATAGATAGGGTAGAAGGAGCTGATGAACATAACCATCCTACTTCTTCAAGCACTACAGACTCATCCAATGGCTTTGGCTCAATGATGCATGGCAGCTCATCATGCTCTCAAAGCTTTGAGAACCAGAAGCATTCAAAAGTCAAGTCAACTTGTGTTGATAGTGGatcaaaaattattgtgaaaGCTAGCTATAGGGGAGATACTATTCGTTTCAAGTTTGATCCATTCGCAGGTTGTTTCCAGCTATATGAAGAAGTTGCAACAAGGTTCAAATTACAAAATGGGTCATTCCAGCTTAAATATCTAGATGATGAAGAGGAGTGGGTGATGCTGGTGAATGACTCGGATTTGCAAGAGTGTACAGAAATTTTGGATGACATTGGCACACGTTGTGTGAAGTTTCTTGTCCGTGATGTGCCTAGTGTTTTAAGCAGCCGTGGCAGCAACAGTTGCTTCTTGTCAGACTGCTCATAG 2907 0.4125 MEDHFSPKGKEIDYCTPPGAQLNEESTPVDGGMKNSASEDMFSNFSELLNFDTYAGWSNSPSMTDQSLANVFSSFSSAPYPPPDGLNLVEHSNGPFFMTEVSEIHNGMDIQLGFLDDANNLDSKQKHNVPSQQLNTSDMCNYIISRSSGRSLDDRMLRALSFFMESADGGMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSAEGKPGSCPGLPARVFISHVPEWTSNVGYYNKTEYLRLEHAMNHEIRGSIALPISDVHSQVPCAVLELVTTKEKANFDRELEIVSHALQLVNLRTTMPPRLLPQCLSSNKRAGLTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIGDETERIRIKEGHTSSNEKCVLCIEESACYVNDGAVGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDVSEYPLVHHARKYNLNAAVAIRLRSTYTNNDDYILEFFLPVNMTGGSEQQLLLDNLSGTMRRICRSLRTVSDAELTGMEGSQAGFPKEKVPGFFPMSRRNSQIAFINDDRDSVQKMSLKASNLRKNGIEAAHSQEMNGSRKQVEKKRSAVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQAVLDSVQGVEGGLKFDPYTGGFIAGGSIMKETEAHKYLLFPEKSDVKDPKPATQKAVSVNSAPGSTDENSAIKLDDADGVCLMGNQLVHSTSVLISNTSEGELKKDNASSDDCCENSKSVAMNDGSCQKASLWTKTKDCPEQTCLEVENSIRDIACHSSISLVTDEVEIGIDRVEGADEHNHPTSSSTTDSSNGFGSMMHGSSSCSQSFENQKHSKVKSTCVDSGSKIIVKASYRGDTIRFKFDPFAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECTEILDDIGTRCVKFLVRDVPSVLSSRGSNSCFLSDCS 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2762 968 MobiDBLite consensus disorder prediction 1 35 - -
Ssu3g2762 968 SMART PB1_new 868 950 IPR000270 GO:0005515
Ssu3g2762 968 ProSiteProfiles PB1 domain profile. 868 950 IPR000270 GO:0005515
Ssu3g2762 968 SUPERFAMILY CAD & PB1 domains 863 953 - -
Ssu3g2762 968 Pfam PB1 domain 871 949 IPR000270 GO:0005515
Ssu3g2762 968 MobiDBLite consensus disorder prediction 816 840 - -
Ssu3g2762 968 MobiDBLite consensus disorder prediction 822 840 - -
Ssu3g2762 968 ProSiteProfiles RWP-RK domain profile. 565 653 IPR003035 -
Ssu3g2762 968 MobiDBLite consensus disorder prediction 20 35 - -
Ssu3g2762 968 Pfam RWP-RK domain 585 633 IPR003035 -
Ssu3g2762 968 MobiDBLite consensus disorder prediction 689 710 - -
Ssu3g2762 968 PANTHER PROTEIN NLP8 5 965 IPR045012 GO:0003700
Ssu3g2762 968 MobiDBLite consensus disorder prediction 695 709 - -
Ssu3g2762 968 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 965 - -
Ssu3g2762 968 Gene3D - 864 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2762 Ssu-Chr3 81914710 81919113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2762 1 964 NLP Transcription Factor Family AT2G43500 48.430 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ssu3g2762 PB1 4.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2762 - - gmx:100793770 1674.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0347 8 5679701 5685220 Ssu3g2762 3 81914710 81919113 PCT