Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2751 ATGCCACTTCCGGCGAAACCGACGAGGGATTCCGACGAGTCGGCGAGTCCCTCGAACAACCTCTGGGTGGGGAATCTGGCGCCGGACGTCACCGACTCCGATCTGATGGAACTTTTCGCGAAGTACGGCGCACTTGACAGCGTGACGTCGTATTCCGCTCGCAGTTACGCCTTCGTGTTCTTCAAGCGCGTCGAAGACGCCAAAGCCGCTAAGAGCGCTCTCCAAGGCATCTCTCTCCGCGGCAGTTCCTTGAAGATTGAATTTGCCAGACCGGCAAAGGCATCTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGATTTTAAGTTCTTCAGAGACCGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTACTCAGGCCATGAAAATCATGAATGGGAAACGAATGGGTGGGGAGCATATTCGTGTTGACTTCCTTCGGTCACAATCTACAAAAAAGGATCAGTTGCTTGATTATGGGCAATTTCAAGGAAAAAGCTTGGGGCCTACTGATGCTTATTCTGGACAGAAAAGACCACTGCATTCACAGCCTCCAATGGGGAGGAAAGGCGACGGTCAACCGAGTAATATTCTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGACGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAATTATTCAATTGTTGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATTCTCGAATAGCAATTATGTATTCAAGCAGTGACCTAGTACCTGGCAATGATTACCCTGGTTCTGGCTTTTTTCCTGGAAGTAATGGGCCGAGACCTGACTTATTGCTGAATGAGCATCCATTTCGACCATTACAAATGGATGTATTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTCCTGGACAGTTACCACCTAGTGGTATTATGGGACCAAATGTACAAATGCGACCTTTTGGTCCTCATGGTGGTGTTGAATCTGTTATTTCTGGCCCTGAGTTTAATGAGATTAATGCGCTACACAAATTTCAGGATGGTAGCTCCAAGAGTAACATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCAGCAGGCGTTAGGCTTCCTACAAGATCAACCTCTGGTGCATGGGATGTACTTGACATAAACAATATTCCAAGAGATTCTAAACGTTCAAGGATAGATGGACCTTTACCTGTTGATGATGCCCCATTTCCTTTGAGGAATATGGACGATCGTGGATTAGCTCTAGAACAAACATATGGGATTGATCCAGCTATGGACAGAGGTGGTTCTGGTCCATATGTAAACATTCAAGGGAAGAGTCACCTTGGTCCAGTGAGCTCAAGGATTACAGCTGGAGCACATGGTTTCGTCCAACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTCCCGTTTGGGAAAGGGATTGGGACTGAGCTTCCTGATGTTGTTGATTGCTCAGCTAGGACAGGATTGGATATACTCACAAAACATTATGCTGATGCAATTggttttgatattgttttctttctccCTGATAGTGAAGATGATTTTGCTTCATATACTGAATTCCTTCGCTATCTTAGTGCGAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCTTGGTGCCTCCTTCTGATTTTCTTACAAAAGTTTTGAAAGTCACTGGACCTGAGCGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCTATGCAACAACCATCACATTTGCCTATACCGCCCACTCAGTATATGCAGCAGATTCCTCCTTCACAGACTGAATATGGTTTGATTCCTATAAAAGAGGAACAGGTTTTGCCAATGGATTATAACAGATCGTTGCATGAGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCGCCTTCAGGTGGCCCCCCTTCAGTTCAGTCTGTGCCTCTAGATTATGCTCCTAATACTACTGTTGCTGGGTCCCAAGCTGGAGTTGCATTAACACCTGAGCTTATTGCAACTTTAGCTTCTTTTCTCCCTGCAACTACACAATCATCTGCCACTGATGGTGCCAAGTCAGCAGTAGGTTCCTCAACCATGAAGCCTCCATTTTTTCCCATGGCACCAAATGATGGAAATCAATCTCATTTATGGAAACAGGATAATCAAATTGCGGATCAATCCACTCATCCTCCCCAAAAGTTGAGTAGTATGTATAACATTCACAATGCTCACTATCATCCTTATCCAGCCAGCATCTGCTCCTGCTGGCAATACTGCCCAAGTGGTCTCTGGCAGTTCTCATATCCAAGATACTGCTGCTAG 2511 0.4432 MPLPAKPTRDSDESASPSNNLWVGNLAPDVTDSDLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKSALQGISLRGSSLKIEFARPAKASKQLWVGGISPAVTKEELEAEFRKFGKIEDFKFFRDRNTACVEFFNLEDATQAMKIMNGKRMGGEHIRVDFLRSQSTKKDQLLDYGQFQGKSLGPTDAYSGQKRPLHSQPPMGRKGDGQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPSRNYSIVEFRSVDEARRAKEGLQGRLFNDSRIAIMYSSSDLVPGNDYPGSGFFPGSNGPRPDLLLNEHPFRPLQMDVFGHNRPMVPNNFPGQLPPSGIMGPNVQMRPFGPHGGVESVISGPEFNEINALHKFQDGSSKSNMGPNWKRPSPPAPGMLSSPAAGVRLPTRSTSGAWDVLDINNIPRDSKRSRIDGPLPVDDAPFPLRNMDDRGLALEQTYGIDPAMDRGGSGPYVNIQGKSHLGPVSSRITAGAHGFVQPDIDHIWRGIIAKGGTPVCRARCVPFGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPSSAPMQQPSHLPIPPTQYMQQIPPSQTEYGLIPIKEEQVLPMDYNRSLHEDSKLPAKPVYPPSGGPPSVQSVPLDYAPNTTVAGSQAGVALTPELIATLASFLPATTQSSATDGAKSAVGSSTMKPPFFPMAPNDGNQSHLWKQDNQIADQSTHPPQKLSSMYNIHNAHYHPYPASICSCWQYCPSGLWQFSYPRYCC 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2751 836 Pfam SPOC domain 509 625 IPR012921 -
Ssu3g2751 836 SMART rrm1_1 217 285 IPR000504 GO:0003723
Ssu3g2751 836 SMART rrm1_1 20 87 IPR000504 GO:0003723
Ssu3g2751 836 SMART rrm1_1 97 164 IPR000504 GO:0003723
Ssu3g2751 836 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Ssu3g2751 836 SUPERFAMILY RNA-binding domain, RBD 7 93 IPR035979 GO:0003676
Ssu3g2751 836 MobiDBLite consensus disorder prediction 1 20 - -
Ssu3g2751 836 MobiDBLite consensus disorder prediction 187 214 - -
Ssu3g2751 836 CDD RRM3_Spen 98 167 - -
Ssu3g2751 836 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Ssu3g2751 836 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 812 - -
Ssu3g2751 836 MobiDBLite consensus disorder prediction 435 454 - -
Ssu3g2751 836 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 812 - -
Ssu3g2751 836 SUPERFAMILY RNA-binding domain, RBD 211 300 IPR035979 GO:0003676
Ssu3g2751 836 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723
Ssu3g2751 836 CDD RRM3_Spen 21 90 - -
Ssu3g2751 836 Gene3D - 207 297 IPR012677 -
Ssu3g2751 836 SUPERFAMILY RNA-binding domain, RBD 95 181 IPR035979 GO:0003676
Ssu3g2751 836 Gene3D - 94 175 IPR012677 -
Ssu3g2751 836 Gene3D - 4 93 IPR012677 -
Ssu3g2751 836 MobiDBLite consensus disorder prediction 690 711 - -
Ssu3g2751 836 CDD RRM3_Spen 218 287 - -
Ssu3g2751 836 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Ssu3g2751 836 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Ssu3g2751 836 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2751 Ssu-Chr3 81805796 81812375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2751 1 349 Eukaryotic Initiation Factors Gene Family AT4G34110 21.500 1.70e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2751 - - gmx:100777570 1506.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0359 8 5825432 5830015 Ssu3g2751 3 81805796 81812375 PCT