Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2748 ATGGACAAGGACAAATCCCCTCGTCTcccacccccacccccaccccctTCTTCCCGTTACGTCAAATCAGAACCGAGCGCTGCCACCTCGGATTCCGGTACCTTCAGCCACGACATCAGCGGAATGCCCGACGATCCACCCAAAAACAGAGGCCACAGACGCGCCCATTCCGAGATTCTCACCCTCCCCGACGACATCACCTTCGACAGTGATCTCGGCGTCGCCGCCGATGACGTCGACGAAGACATACTCTCCCTCTACCTCCACATCGATTCCTCCCCGCTGCCTCAAGAGGATAACAACAACGTTGGTAACGAAAGGGCGAGGGTCAGACACCAACATAGCCACTCCATGGACGGGTCCATCCAGCCGGAGATGCTCGTCTCCGGCGTGGATTCTAAGAAGGCAATGTCCGCTGCCAAGCTTGCAGACCTTGCCTCACTTGATCCCAAGCGGGCTAAAAGGATATGGGCAAATAGACAGTCTGCTGCAAGatcaaaagaaaggaagatgcGCTACATTTCCGAGCTTGAAAGGAAAGTGCAGACATTGCAAACAGAAGCAACATCCTTGTCTGCACAATTAACTCTGTTGCGGAGAGATACAAATGGACTGACTGCTGAGAGCAGTGAGTTGAAGTTGCGGTTGCAAACCATGGAGCAACAGGTTCACTTGCAAGATGCATTAAATGATGCATTAAAAGAGGAAATTCAGCATTTGAAAGTACTGACTGGACAAGTTATGCCAAATGGAGGACCTATAAACTTTGCTTCATTTGGTGGGGGGCAACAATTCTATCCCAACAATCAGGCCATGCACACTCTTTTAGCTGCTCAACAGTTTCAACAACTTCAAATTCATTCCCAGAAGCAGCATCACCAACTTCAGCAGCAACAGCAGTTTCAGCAACATCAACTTCAGCAGCAACAACAGTTTCACCAGCATCAACTacagcagcagcagcaacagGAACAGTAA 978 0.4673 MDKDKSPRLPPPPPPPSSRYVKSEPSAATSDSGTFSHDISGMPDDPPKNRGHRRAHSEILTLPDDITFDSDLGVAADDVDEDILSLYLHIDSSPLPQEDNNNVGNERARVRHQHSHSMDGSIQPEMLVSGVDSKKAMSAAKLADLASLDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLRRDTNGLTAESSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQVMPNGGPINFASFGGGQQFYPNNQAMHTLLAAQQFQQLQIHSQKQHHQLQQQQQFQQHQLQQQQQFHQHQLQQQQQQEQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2748 325 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 149 212 IPR004827 GO:0003700|GO:0006355
Ssu3g2748 325 MobiDBLite consensus disorder prediction 22 37 - -
Ssu3g2748 325 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 103 303 - -
Ssu3g2748 325 Coils Coil 303 323 - -
Ssu3g2748 325 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 26 91 - -
Ssu3g2748 325 Gene3D - 150 202 - -
Ssu3g2748 325 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 103 303 - -
Ssu3g2748 325 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 26 91 - -
Ssu3g2748 325 CDD bZIP_plant_RF2 152 201 IPR044759 GO:0003700|GO:0006355
Ssu3g2748 325 Pfam bZIP transcription factor 151 202 IPR004827 GO:0003700|GO:0006355
Ssu3g2748 325 SMART brlzneu 147 211 IPR004827 GO:0003700|GO:0006355
Ssu3g2748 325 Coils Coil 216 236 - -
Ssu3g2748 325 MobiDBLite consensus disorder prediction 1 54 - -
Ssu3g2748 325 Coils Coil 167 201 - -
Ssu3g2748 325 SUPERFAMILY Leucine zipper domain 151 205 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2748 Ssu-Chr3 81782125 81785804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2748 1 288 bZIP Transcription Factor Family AT2G31370 60.234 5.42e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu3g2748 bZIP_1 4.8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2748 - - gmx:100814674 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0361 8 5848969 5852077 Ssu3g2748 3 81782125 81785804 PCT