Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2745 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACAGTGATTTGTTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCGAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAATGTCTGTCAAACAAGCTTCCCAGATGTGACATATGTCAAGATAAGGCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTAAAGACTGTGATGAACTAATTCATTTAGCCGGGAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCTACTGGTATCCGGGTGGCTTTGGGGTCTAACTGTACCAAAGACAATGCAAAAAGTCACGTGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAATTCCTTCTCAGCAAGTGCCTAACTTCACATCCTCTTGGGCTGTTGATGACTTGTTGGAATTAACAAACTTTGAATCACCAGACAAAAAGCAATCCCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGTGGGCCTTTTCGGTGAACAGTTTCCTCAGGAAGCTTTAGCCGCGGCCGAAGTTCCTCAGCTTCCAGTGACACACACTAGCAGTGTTGCCTCACACAAAGCCCCTAAATCCTTTATGTCCTACAAAAAGCCTAGGATTGAACTAGTCCtagatgaagatgatgatgagcACTTCACTGTACCTGATCTTGGCTAA 720 0.4417 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDELIHLAGSLSANHQRFLATGIRVALGSNCTKDNAKSHVEPSNPNAQEVPVKIPSQQVPNFTSSWAVDDLLELTNFESPDKKQSLEFGELEWLADVGLFGEQFPQEALAAAEVPQLPVTHTSSVASHKAPKSFMSYKKPRIELVLDEDDDEHFTVPDLG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2745 239 CDD Bbox1_BBX-like 57 98 - -
Ssu3g2745 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Ssu3g2745 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Ssu3g2745 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Ssu3g2745 239 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 239 - -
Ssu3g2745 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu3g2745 239 Gene3D Classic Zinc Finger 1 95 - -
Ssu3g2745 239 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
Ssu3g2745 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Ssu3g2745 239 CDD Bbox1_BBX-like 5 47 - -
Ssu3g2745 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2745 Ssu-Chr3 81733964 81743042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2745 1 161 Orphan Transcription Factor Family AT1G06040 67.262 1.74e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Ssu3g2745 zf-B_box 5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2745 - - gmx:100779183 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0367 8 5885803 5888290 Ssu3g2745 3 81733964 81743042 PCT