Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2742 atgaatGAGTTATTCATCAATTTCATAGACTGTTGTGTAGAACTAGAATATCACCTGtgcaatgaaaataatataccAGATTCTTTTGTTGCTGCAGTGGAGTTTGGGATTGATGGCTCTATTACTGTTGAGACAGTAGGAAATACTGCTATAGGTGAGATTAGTAGCACAGCTGATGACAACAGAGAAGGTGGAAGTTCTGTTGAACCAACTTACAAACAAGATCAAGATGATAATGTGACTCAAGATTCCTCTGGAGGGATCACTATCCCATCTGCAATTCCCACAGTATCGGTTGTTTCAGTTGAAGAACCCTATGTGGGTCAGGAGTTTGAGTCGGAATCAGCAGCACATGCATTTTATAATGCATATGCCACGAATGTTGGATTTGTTATACGTGTGAGTAAACTCTCGCGATCAAGGCGTGATGGATCTGCTATTGGACGAGCTCTTGTTTGCAACAAAGAGGGTTTCAGAATGCCTGACAGACGTGAAAAGGTTGTGAGGCAAAGGGCCGAGACCAGGGTTGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTTAGTTCTGGCAAATGGTTTGTTTCAAAGTTCGTAAAGGAACACACGCATCCTTTGGCTCCTGGTAAAGGTAGAAGGGATTTCATTTATGAACAATATCCGAATGAACAAGATAAAATTCGGGAACTATCTCAGCAGTTGGCAATTGAGAAGAAGCGATCTGCAACCTATAAAAGACATCTTGAACTGATATTTGAGCACATTGAAGAGCATAATGAGGGCCTTTCAAAGAAAATACAGCACATAGTAGCCAGTGTGAAGGAGATGGAAACCAAAGAACAACAGAGTCAACTCTGA 855 0.4058 MNELFINFIDCCVELEYHLCNENNIPDSFVAAVEFGIDGSITVETVGNTAIGEISSTADDNREGGSSVEPTYKQDQDDNVTQDSSGGITIPSAIPTVSVVSVEEPYVGQEFESESAAHAFYNAYATNVGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDRREKVVRQRAETRVGCRAMILVRKVSSGKWFVSKFVKEHTHPLAPGKGRRDFIYEQYPNEQDKIRELSQQLAIEKKRSATYKRHLELIFEHIEEHNEGLSKKIQHIVASVKEMETKEQQSQL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2742 284 Coils Coil 275 284 - -
Ssu3g2742 284 Pfam FAR1 DNA-binding domain 120 206 IPR004330 -
Ssu3g2742 284 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 31 282 - -
Ssu3g2742 284 MobiDBLite consensus disorder prediction 52 87 - -
Ssu3g2742 284 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 31 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2742 Ssu-Chr3 81698634 81700020 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu3g2742 FAR1 4.5e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2742 - - gmx:100777092 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0371 8 5915992 5917401 Ssu3g2742 3 81698634 81700020 PCT