Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2733 ATGTATCCAAAGCGGTCAGGCGAAGATGGCCCTGTTTCCAGACAGGTGCGCTCAAGTGATAGGATCAAGACAAGGCCCAACATTTATGGCCGGCCATTCTTGTATTACAACCAAAGTCTTAGGCGCACCAGGAAAAGCAAGATCAAGACAAGAACTGCAGCTTCACAGATTGCTAAGATGTTGCGTCCAGGGAATCGGAAATCGCAAGACTCTAATACTAATTCTGGCTCTGCCAATCTTCGACGTTCAACAAGAAAGAGAAGGCTTAATGTAAATCTTGAAGATTTTACAGACAGCTCTGGAGCTGAAGACGAAGACTTAATGAGACCTACGTATCAACAATTGAGAAACCGGAGTAACAATAGTGTCAGACAGGATGGTTTGATGTCTACTAAGCGCAAAAGAGGAGTGGAGACTAAACCAACACCTCGACGTGAAGGTCTGCGTCCTCGTCGTTCAAAGGCTGCTGCAAAGGAACGCTTAATTTCAGAATCAGATGATGAGCAAGACCTTTCAGAGGAAAAGGCTGATCAGGATGAAacagaaaatggaaatgatGTTGAGGAAAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGATGCCGAGGGTGAAGATGAAGGTGAAGATGAAGGGGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTTCAGATGTCCGGAGGTTCTCTATGGAGGAAGGGAAGGCCCGGCCAAGATCTCCTCGAAGAGTGTTACATCAGGGTATGGGAACTAAGGTCAGCAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCGAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGCTTGACCAAGGCCCAGCTATTCCATGGGGGCGAGGTGGCAGCAGATCTGGTCCACCTTGGCTTTTTGGGGGCTTAGACATGCATGGAACAACAGCTTTCGGATTAAATCTTGCTGCTTCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTACTCTAACTTCAGGAATTCAAACTGCTGGACCGAGCTCTAAGGGAGGGGCTGATATCCAACCCTTACAGGTTGATGATAGTGTTAGTTTTGACGATATAGGTGGGCTTTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTATATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTGTTGTTATGTGGGCCCCCTGGCACAGGGAAAACGTTAATTGCAAGAGCCTTGGCTTGTGCCGCTTCAAAAGCTGGCCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTCGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGAGCTACCAATAGAATTGATGCTATTGATGGTGCCTTACGACGCCCTGGTAGATTTGATCGTGAGTTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTTCCGAGATATTAGACATTCATACTCGTAAGTGGAAGCATCCTCCTCCAAATGAGCTGAAAATGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGACCTGAAGGCTCTTTGTACTGAAGCTGCCATCCGTGCATTCCGTCAAAAATATCCACAAGTTTATACAAGTGATGACAAATTTGTCATTGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCAATGTCTACGATTACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATTTAGAGAAAGCCATGAGTATTATATCTGATATTTTCCCTCCAGCTACTATTGTGTCAGAGTTGACCAAACTTTCGATGCTTTCCTATGGGTCTGCAATTCCACTTGTGTATCGGCCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAATTTCCTGTACATTCATTAGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAGATACCAGAGGAGGCATTGGTACATATATTTGGTGAAGCTAGAAGAACAACACCATCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAGACTGCTCATGAACAGCTCAGGGCTGTTCTCTTGACTTTGCTAGAAGAATTACCATCCGACTTGCCTATCTTACTGCTTGGTACATCCTCAGTTGCACTTGCTGAAGTTGAGGAAGTGCCTCCTTCCGTTTTCCCTCATCGCTCAGTTTATCAAGTGAATATGCCATGTGCCAAAGATAGGACATTGTTTTTCAATCTTTTGATTGAAGCTGCTATGTCGATATTGTTGGAGGGAATCAACAAGAAATCACAGGATACAGGATACCTCCCTGATCTTCCCAAGGCACCGAAATTGGCTAGTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGTAGATTACGAATGTGCCTTAGAGATGTTTGCAACCGGATACTGTATGACAAACGATTTAATGCCTTCCATTATCCAGTTTCAGACGAAGATGCACCAAATTATCGCTCAATTATACAGAACCCAATGGACATGGCTACCATTCTGCAGCATGTTGATAATGGCCACTATATTACTTGTGCTGCATTCCTGCAGGACATCGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGAGGACTACAATGGCGCTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGGATGCTCTCACAGATGGATCCAGCACTGGTTGCATATTGCGACAAGATTGCTAGCCAAGGTGGTCCAGTTCAGTTGTCTGATGAATTAGGGGATTCTACATTCCCTGCTACTCCTGTTGTGCAGCTGGGTGCTGGTATTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATATGGATCAGAGTTATGAAGCATTGAAGCGGACTAAGAAGATTGCCGAAGTACATGCAGCAGAAGACAAGTCACAACAAGATTCTGTACCGTCAAAGTCTTTCCAGGAGCATCAGGCAAATGACACAAATTCTGAAAGGCTGGAACCCATGTCAATTGAAGGAAATTTGCATGGAACTTGTACAAATAACCTTGCTGATGGTGACAGTCCTGGTGATGTCACAATGCTAGATGATGAATTTTTAACAGAGGTGGAGTCTGTCAAGCAGCTTTTTGTGAAGCGTAGTGAAAATTACAGCATTCCACAACTTGAAAGGCTTTACACGAGAATTATGAAGGGTGtgtttgaaaccaaaaataaaggAGTTAATGGGGATCTTAAGTCATcggtttttaagtttttgttgaattttgtagATGATGATGCAAATTTCTAA 3603 0.436 MYPKRSGEDGPVSRQVRSSDRIKTRPNIYGRPFLYYNQSLRRTRKSKIKTRTAASQIAKMLRPGNRKSQDSNTNSGSANLRRSTRKRRLNVNLEDFTDSSGAEDEDLMRPTYQQLRNRSNNSVRQDGLMSTKRKRGVETKPTPRREGLRPRRSKAAAKERLISESDDEQDLSEEKADQDETENGNDVEENDADDGQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEEGKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLDMHGTTAFGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARSEILDIHTRKWKHPPPNELKMELAASCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFPPATIVSELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKIPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVALAEVEEVPPSVFPHRSVYQVNMPCAKDRTLFFNLLIEAAMSILLEGINKKSQDTGYLPDLPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATILQHVDNGHYITCAAFLQDIDLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALVAYCDKIASQGGPVQLSDELGDSTFPATPVVQLGAGIRMSARLRHVQPEVNMDQSYEALKRTKKIAEVHAAEDKSQQDSVPSKSFQEHQANDTNSERLEPMSIEGNLHGTCTNNLADGDSPGDVTMLDDEFLTEVESVKQLFVKRSENYSIPQLERLYTRIMKGVFETKNKGVNGDLKSSVFKFLLNFVDDDANF 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2733 1200 PRINTS Bromodomain signature 962 981 IPR001487 GO:0005515
Ssu3g2733 1200 PRINTS Bromodomain signature 928 944 IPR001487 GO:0005515
Ssu3g2733 1200 PRINTS Bromodomain signature 944 962 IPR001487 GO:0005515
Ssu3g2733 1200 Pfam Bromodomain 909 977 IPR001487 GO:0005515
Ssu3g2733 1200 Pfam AAA+ lid domain 579 615 IPR041569 -
Ssu3g2733 1200 ProSitePatterns AAA-protein family signature. 521 539 IPR003960 GO:0005524|GO:0016887
Ssu3g2733 1200 MobiDBLite consensus disorder prediction 166 223 - -
Ssu3g2733 1200 MobiDBLite consensus disorder prediction 1076 1103 - -
Ssu3g2733 1200 Gene3D - 374 644 IPR027417 -
Ssu3g2733 1200 ProSiteProfiles Bromodomain profile. 919 981 IPR001487 GO:0005515
Ssu3g2733 1200 MobiDBLite consensus disorder prediction 1082 1103 - -
Ssu3g2733 1200 Pfam ATPase family associated with various cellular activities (AAA) 416 551 IPR003959 GO:0005524|GO:0016887
Ssu3g2733 1200 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2733 1200 MobiDBLite consensus disorder prediction 128 165 - -
Ssu3g2733 1200 MobiDBLite consensus disorder prediction 44 291 - -
Ssu3g2733 1200 CDD AAA 412 551 - -
Ssu3g2733 1200 MobiDBLite consensus disorder prediction 1 25 - -
Ssu3g2733 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 641 IPR027417 -
Ssu3g2733 1200 MobiDBLite consensus disorder prediction 224 254 - -
Ssu3g2733 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 913 IPR027417 -
Ssu3g2733 1200 SMART bromo_6 896 1003 IPR001487 GO:0005515
Ssu3g2733 1200 PANTHER AAA DOMAIN-CONTAINING 2 1194 IPR045199 -
Ssu3g2733 1200 Gene3D - 888 1016 IPR036427 GO:0005515
Ssu3g2733 1200 MobiDBLite consensus disorder prediction 65 80 - -
Ssu3g2733 1200 CDD Bromo_AAA 896 1006 - -
Ssu3g2733 1200 MobiDBLite consensus disorder prediction 112 127 - -
Ssu3g2733 1200 CDD AAA 696 808 - -
Ssu3g2733 1200 PANTHER BNAC08G44480D PROTEIN 2 1194 - -
Ssu3g2733 1200 SUPERFAMILY Bromodomain 894 1008 IPR036427 GO:0005515
Ssu3g2733 1200 SMART AAA_5 412 553 IPR003593 -
Ssu3g2733 1200 Gene3D - 552 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2733 Ssu-Chr3 81524853 81532515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2733 362 616 Calmodulin-binding Proteins AT3G56690 37.066 8.16e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2733 K22531 - gmx:100787765 2161.34