Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2727 ATGGGAAGCTGCATATCAACGCAAGGCGGGAAAACACGCAAGAGGGCGAAGAACCCCAACAAGCCCTCCCCGCCGCCGAAAGGGCACGACCACGGCCAGGACCACGGCGACGGTCACGAACCGGCGCGAAGGTCGAGCGTGGCGGCGCGTAGGTCGAGCGTAACGGCGCGTCCGCCGAACGTGGTGGCTAACCCGAGCCCGGGGAACATATTTGAGAAGTACCAGTTCGGGAAGGAGCTGGGGCGCGGCGAGTTCGGCGTGACGCACCGCGTGGTGGACGTGAAAAGCGGCGAAGCGTTTGCGTGCAAGAAGATATCGAAGACGAAGCTGAGGACGGAGATTGACGTGCAGGACGTGAGGAGGGAGGTGCAGATCATGAGGCACCTGCCTCAACACCCCAACATCGTTGCCTTCAAGGAGGCTTTTGAGGACAAAGACGCTGTTTACCTCGTCATGGAACTGTGCGAAGGCGGTGAACTCTTTGATAGGATTGTTGCTAAGGGCCATTACACCGAGCGTGCGGCTGCTAATGTTACCAAAACCATACTTGACGTGTGTCATGAGCACGGAGTAATACACAGGGACTTAAAACctgaaaatttcttatttacAGATGCAAGCGAGTCTGCTGCATTGAAGTCAATTGATTTTGGCCTTTCCACCTTCTATGTGCCTGGCGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCCGAGGTTTTAAGACGTAACTACGGACCAGAAATTGATGTCTGGAGTACAGGAGTAATTCTGTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAATCTGAGGAAGGGATTGCACAGGCGATCATCAGGAGTAAAGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCAGATGAAGCAAAACATCTAGTTAAGCGCATGCTTGATCCAAATCCATTCACCCGGATAAAAGTTCAAGAAGTTCTTGATCATTCCTGGATACAACATAGGGAGCACGGTCGAACTATTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAAGAAAGTTCTTAGAGTGGTAGCTGATAACCTGCCAGATGAGCAAATTGATGTGATTAAGCAAATGTTCGATATGATGGATAAGGACAAAAATGGAAACTTGTCATTTGAGGAGCTCAAAGATGGCCTTTCAATGATTGGACACGCCCTTCCTGATCCTGATGTCCAGATGTTAATGGATGCTGCAGATATTGATGGAAACGGCACCCTCAATTATGAAGAGTTCATCACAATGAATGTTCATCTGAGAAAGATCGAATGTGATGAACATCTCTCTGAAGCGTTCCGTTTCTTTGACAAGAACCAGAGCGGATATGTTGAGTTTGAGGAGTTGAAAGATGCCTTATCAGATGATGAGTCAGAAGCCAGTAACGACGAAGTGATCAAAGACATTCTAAATGATGTTGACTTGGATAAGGACGGTCGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCTTCTCGCCAGTATTCAAGAGCATTGCTAAATGCATTAAGCTCCAGGATGTTTAAGGACACATCTATCAAATCTGTAGACACATCTAACAAATCTGTTAAGTGTAACTAA 1665 0.4667 MGSCISTQGGKTRKRAKNPNKPSPPPKGHDHGQDHGDGHEPARRSSVAARRSSVTARPPNVVANPSPGNIFEKYQFGKELGRGEFGVTHRVVDVKSGEAFACKKISKTKLRTEIDVQDVRREVQIMRHLPQHPNIVAFKEAFEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILDVCHEHGVIHRDLKPENFLFTDASESAALKSIDFGLSTFYVPGERFSEIVGSPYYMAPEVLRRNYGPEIDVWSTGVILYILLCGVPPFWAESEEGIAQAIIRSKVDFTRDPWPKVSDEAKHLVKRMLDPNPFTRIKVQEVLDHSWIQHREHGRTISLGDQVRMRIKQFSLMNRFKKKVLRVVADNLPDEQIDVIKQMFDMMDKDKNGNLSFEELKDGLSMIGHALPDPDVQMLMDAADIDGNGTLNYEEFITMNVHLRKIECDEHLSEAFRFFDKNQSGYVEFEELKDALSDDESEASNDEVIKDILNDVDLDKDGRISFEEFKAMMKTGGDWKMASRQYSRALLNALSSRMFKDTSIKSVDTSNKSVKCN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2727 554 Pfam EF-hand domain pair 447 511 IPR002048 GO:0005509
Ssu3g2727 554 Pfam EF-hand domain pair 375 435 IPR002048 GO:0005509
Ssu3g2727 554 SUPERFAMILY Protein kinase-like (PK-like) 71 330 IPR011009 -
Ssu3g2727 554 CDD EFh 377 436 IPR002048 GO:0005509
Ssu3g2727 554 MobiDBLite consensus disorder prediction 48 62 - -
Ssu3g2727 554 Gene3D Phosphorylase Kinase; domain 1 76 159 - -
Ssu3g2727 554 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Ssu3g2727 554 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Ssu3g2727 554 ProSiteProfiles EF-hand calcium-binding domain profile. 481 516 IPR002048 GO:0005509
Ssu3g2727 554 MobiDBLite consensus disorder prediction 1 68 - -
Ssu3g2727 554 SMART efh_1 485 513 IPR002048 GO:0005509
Ssu3g2727 554 SMART efh_1 448 476 IPR002048 GO:0005509
Ssu3g2727 554 SMART efh_1 412 440 IPR002048 GO:0005509
Ssu3g2727 554 SMART efh_1 376 404 IPR002048 GO:0005509
Ssu3g2727 554 MobiDBLite consensus disorder prediction 27 46 - -
Ssu3g2727 554 ProSiteProfiles Protein kinase domain profile. 74 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2727 554 CDD EFh 448 511 IPR002048 GO:0005509
Ssu3g2727 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Ssu3g2727 554 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Ssu3g2727 554 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Ssu3g2727 554 Gene3D - 338 513 - -
Ssu3g2727 554 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Ssu3g2727 554 Gene3D Transferase(Phosphotransferase) domain 1 160 337 - -
Ssu3g2727 554 SUPERFAMILY EF-hand 357 523 IPR011992 -
Ssu3g2727 554 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Ssu3g2727 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 53 527 - -
Ssu3g2727 554 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Ssu3g2727 554 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 53 527 - -
Ssu3g2727 554 SMART serkin_6 74 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2727 554 CDD STKc_CAMK 73 328 - -
Ssu3g2727 554 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Ssu3g2727 554 Pfam Protein kinase domain 74 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2727 Ssu-Chr3 81472077 81475992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2727 1 538 EF-hand Containing Proteins AT2G31500 65.385 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu3g2727 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2727 K13412 - gmx:100818929 952.584