Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2714 ATGCGTACTCGATGGCGTGCCTCCACGTGGCGCGGCACCACTACGGCAACGGCGAATTCAGAGAGGCGCTTAGGGTTTTGGATTTGGGAATCATCATGGGAGGCACGCTCCTCCGAAAGGATTTGGACTCCGCCAGTCGAGAAAGTGTCGGAACAAACACGGAGTAGCGTTAGGGTTTCCGATTTGGGGAACTCCGAACACCGACTCGTCGATCGCGAATTTGATGTGGCAGAGGTGCTCCAACTTTTACCTGTGAAGTCTCTTTCTTCGAAGCTTGTGGTGAAGAAATCAGGGCTGTCGTTGGAGAAATTCCTGAAGGATCATTACCTGGCTGGCTCCCCTGTTATTATCAGTGATTGTATGGCTCACTGGCCAGCCAAGACAAAATGGAACAACGAGGATTACTTGCTAAGAGTTGCTGGTGACCGCACAGTTCCAGTTGAGGTTGGGAAGAACTATTTATGTGCTGAGTGGAAGCAAGAGCTAATTACATTTTCAGAGTTTCTTCAGCGGATAAAGTCCAGTGGATGTTCTCCTGGTGGGCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAAAGATATCTTTATTCCTGACTATTGTTTTGCTGGTGGGGGGGAGCTACGATCTCTCAATTCTTGGTTTGGTCCAGCAGGAACAGTAACACCATTACACCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCGTCATCTTTGTCCGAGGAACTTTTCCCCTACTCTGGTACCATGCTTAGCAATTCCAGCCAGGTTGATTTAGATGACATAGACGAAAGAAAGTTTCCCAAGGTGCAAGACTTGGAATTTGTAGACTGTATTTTAGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGCGGTCTTTGACTACCAGTTTTTCGGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCGGATGCATCCTAA 1005 0.4647 MRTRWRASTWRGTTTATANSERRLGFWIWESSWEARSSERIWTPPVEKVSEQTRSSVRVSDLGNSEHRLVDREFDVAEVLQLLPVKSLSSKLVVKKSGLSLEKFLKDHYLAGSPVIISDCMAHWPAKTKWNNEDYLLRVAGDRTVPVEVGKNYLCAEWKQELITFSEFLQRIKSSGCSPGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNSWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELFPYSGTMLSNSSQVDLDDIDERKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGESSDAS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2714 334 PANTHER - 82 327 - -
Ssu3g2714 334 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 82 327 - -
Ssu3g2714 334 Pfam Cupin-like domain 103 327 IPR041667 -
Ssu3g2714 334 SMART cupin_9 183 333 IPR003347 -
Ssu3g2714 334 ProSiteProfiles JmjC domain profile. 192 334 IPR003347 -
Ssu3g2714 334 Gene3D Cupin 93 326 - -
Ssu3g2714 334 SUPERFAMILY Clavaminate synthase-like 97 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2714 Ssu-Chr3 81150057 81153714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2714 87 325 Acyl Lipid Metabolism Gene Families AT3G45880 24.662 3.81e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu3g2714 Cupin_8 7.5e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2714 K24444 - gmx:100813075 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2714 3 81150057 81153714 Ssu3g2714 3 81150057 81153714 ECH