Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2709 ATGGAGTCAGATCTTCGGCAGCAGCACCCTCCCATGTTTTTGGATCGTCAGCAGCAGATGAATTCCGGGTTGACACGGTACCGATCGGCTCCGAGTTCCTATTTTTCGAGCATCATTGACCGTGAGTTCTACGAGGACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAGCGAATGTTGACGCGGTTTGTGAATAGTCTTGGTGGGGGTGATGGTGATGCAGAGGATTCACTTGCTACTCAGAATCCCCCAGCTGTTGTTGCAGTTAAAGAAGAGGTTATTCCGCAACCTCAGGATATGCCATCCATGAATAATGAACCCCTTGTTCTCCACCAACAGCAGCAGCAACAGCAAAGTAATATTAGTAACTATGGCTCCTCTGCTCCTAAGAATTTTTACCAAAACACTGGACGACCACCTTTGCCAAATCAGATGAAGACTGGTCGTGCAAGTAGTTCCAATCTTATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAAGTGGCTATGCTGCTGTAAGAGGCATGGGAACTATGGGAGCTGTTAATAACACTAGCGAGGAAGCAAAGTGTTCTCCCGCAGCAAGGATGAAGAATGCACCAAACTACTCTTCGGGACTAATGTCATCAAGAGCTGAAATTGGGACTAAAAGCAATACACAGAATAATGCAGAAAATGAAGGGTTTGCTGGAAGCCAGGGTAATGAATTTATCACTGGTTTCCCCGTAGGTCCATGGGATGATTCTGCAATCATGTCTGACAATATGACTGGTCTAAAAAGATACAGAGATGATgatgtaaaaccattttctggTTTAAATGCACCTGAAAGTCAGAATGAAACAGGAGGCCAGCCTCCTGCTCCTTTGGCTCATCACTTGAGTTTGCCAAATACTGCTGCAGAAATGGCAGCCATTGAGAAGTTTCTGCAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGACGAACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATCTCGTCCCGAACATGGATAAGCAAACAAACACGGCAGATATGTTGGACTTGGCTGTTGAGTATATTAAAGACCTTCAAAAGCAAGTTCAGGTATGTTCAAACCTGACCTGTCTCAGTCCTCTGTCTTGTACACCAAGTCAGGTGCACAGGGGTCCCCATTTTCGGGGATGGAGGATGGGGTGGGGTGGGAAATGCATTTTTGCATCTTCATGGACCGTTGGTTCAGCAATAACGTTAAAAAGGGATGTTATGTGTGGGTTTGGTATCACATTGAATGACATGGGAAACATGGGGGACCGAAGCCGACATAGTTTTGTTGGTTATATATACACGTATGAGTAG 1410 0.4504 MESDLRQQHPPMFLDRQQQMNSGLTRYRSAPSSYFSSIIDREFYEDVFNRPSSPETERMLTRFVNSLGGGDGDAEDSLATQNPPAVVAVKEEVIPQPQDMPSMNNEPLVLHQQQQQQQSNISNYGSSAPKNFYQNTGRPPLPNQMKTGRASSSNLIRHGSSPAGLFSNINIESGYAAVRGMGTMGAVNNTSEEAKCSPAARMKNAPNYSSGLMSSRAEIGTKSNTQNNAENEGFAGSQGNEFITGFPVGPWDDSAIMSDNMTGLKRYRDDDVKPFSGLNAPESQNETGGQPPAPLAHHLSLPNTAAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQKQVQVCSNLTCLSPLSCTPSQVHRGPHFRGWRMGWGGKCIFASSWTVGSAITLKRDVMCGFGITLNDMGNMGDRSRHSFVGYIYTYE 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2709 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 391 IPR036638 GO:0046983
Ssu3g2709 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 381 IPR011598 GO:0046983
Ssu3g2709 469 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 15 390 - -
Ssu3g2709 469 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 390 - -
Ssu3g2709 469 Gene3D - 332 393 IPR036638 GO:0046983
Ssu3g2709 469 SMART finulus 337 387 IPR011598 GO:0046983
Ssu3g2709 469 Pfam Helix-loop-helix DNA-binding domain 336 382 IPR011598 GO:0046983
Ssu3g2709 469 MobiDBLite consensus disorder prediction 272 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2709 Ssu-Chr3 81052174 81056012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2709 1 387 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 43.424 9.22e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g2709 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2709 - - gmx:100803833 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2709 3 81052174 81056012 Ssu3g2709 3 81052174 81056012 ECH
Ssu8g0401 8 6407954 6410087 Ssu3g2709 3 81052174 81056012 ECH
Ssu7g2771 7 57418448 57421741 Ssu3g2709 3 81052174 81056012 ECH
Ssu4g1442 4 23982627 23984774 Ssu3g2709 3 81052174 81056012 ECH