Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2702 ATGAACAACAACTGGCTTTCGTTTCCTCTTTCCCCAACTCATTCTTCCTTACCAGCTCATGATCTTCAAGCAACTCAATATCATCAATTTTCTCTTGGATTAGTGAATGAAAACATGGAAAACCCTTTCCAAAATCATGATTGGAACCTAATTAACACTCATAGCAGCAACGAAGTTCCAAAGGTTGCTGATTTTCTTGGAGTGAGCAAATCTGAAAATCAGTCAGACCTTGCTGCCTTAAATGAAATTCAGTCAAATGATTCAGATTATCTGTTCACAAACAACAGTCTCGTGCCTATGCAAAACCCAGTGGTGGACACACCTAGCAATGAGTACCAAGAAAATGCTAATAGTAATTTGCAATCGTTGACATTATCCATGGGAAGTGGTAAAGATTCAACATGCGAAACCAGCGGTGAAAATAGTGCAAACACTGTTGAAGCAGTACCTAGAAGAACTTTGGATACATTCGGGCAGAGAACATCAATATATCGTGGAGTAACGCGACATAGATGGACTGGAAGGTATGAAGCTCATCTCTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGACGCCAAGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCTGCACTGAAGTACTGGGGGACCTCCACCACTACCAACTTTCCAATTAGCAACTATGAGAAGGAATTAGATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAGGAAAAGCAGTGGTTTCTCCAGAGGTGCATCAATGTATCGCGGAGTTACAAGGTGGCATCACCAACATGGGAGATGGCAAGCAAGGATTGGCAGGGTCGCAGGAAACAAAGATCTTTACTTAGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCAGCAATAAAGTTCAGAGGTCTGAACGCAGTAACCAACTTTGACATGAGTCGTTACGACGTGAAAGCCATTCTCGAAAGCAACACTCTCCCAATAGGAGGAGGCGCTGCTAAACGACTAAAGGAAGCTCAAGCTCTAGAATCTTCGAGAAAACGTGAAGAGATGATTGCACTTGGCTCATCCACCTTTCAATATGGAACCTCAAGCTCTTCTAGGCTACACGCGTACCCTCTAATGCAGCAACATCAGTTTGAGCAACCTCAACCTCTGCTAACTTTGCAAAACCATGACATTGGTTCTCACTTCTCTCACCAAGACCCTTTGCATCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGCCCTTCTCCTTACCTTCAGAATAATGCTCAGTTCTACAACGGCTACCTTCAGAACCACCCCGCATTGCTTCAGGGAATGATGAACATGgggtcttcttcctcttcttcatctctgttggagaataataataataataatagtaacaatgtTGGTGGGTTTGTAGGGAGTGGGTTTGGTATGGCTTCGAATGCATCGTCGGGTAACGCAGTGGGATCGGCGGAGGAACTCGGGTTGGTCAAGGTTGACTATGACATGCCGGCCGGAGGTTACGGTGGCTGGTCGGCGGAGTCCATGCAGACGTCAAATGCTGGTGGGGTGTTCACAATGTGGAATGACTGA 1629 0.4346 MNNNWLSFPLSPTHSSLPAHDLQATQYHQFSLGLVNENMENPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSDLAALNEIQSNDSDYLFTNNSLVPMQNPVVDTPSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSANTVEAVPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRWHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHAYPLMQQHQFEQPQPLLTLQNHDIGSHFSHQDPLHQGYIQTQLQLHQQSGPSPYLQNNAQFYNGYLQNHPALLQGMMNMGSSSSSSSLLENNNNNNSNNVGGFVGSGFGMASNASSGNAVGSAEELGLVKVDYDMPAGGYGGWSAESMQTSNAGGVFTMWND 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2702 542 CDD AP2 261 323 IPR001471 GO:0003700|GO:0006355
Ssu3g2702 542 Pfam AP2 domain 163 218 IPR001471 GO:0003700|GO:0006355
Ssu3g2702 542 Pfam AP2 domain 263 313 IPR001471 GO:0003700|GO:0006355
Ssu3g2702 542 SUPERFAMILY DNA-binding domain 261 323 IPR016177 GO:0003677
Ssu3g2702 542 ProSiteProfiles AP2/ERF domain profile. 262 321 IPR001471 GO:0003700|GO:0006355
Ssu3g2702 542 SMART rav1_2 163 232 IPR001471 GO:0003700|GO:0006355
Ssu3g2702 542 SMART rav1_2 262 327 IPR001471 GO:0003700|GO:0006355
Ssu3g2702 542 Gene3D AP2/ERF domain 262 323 IPR036955 GO:0003700|GO:0006355
Ssu3g2702 542 Gene3D AP2/ERF domain 163 228 IPR036955 GO:0003700|GO:0006355
Ssu3g2702 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 541 - -
Ssu3g2702 542 CDD AP2 162 228 IPR001471 GO:0003700|GO:0006355
Ssu3g2702 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 541 - -
Ssu3g2702 542 PRINTS Ethylene responsive element binding protein signature 303 323 IPR001471 GO:0003700|GO:0006355
Ssu3g2702 542 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Ssu3g2702 542 ProSiteProfiles AP2/ERF domain profile. 163 226 IPR001471 GO:0003700|GO:0006355
Ssu3g2702 542 SUPERFAMILY DNA-binding domain 162 228 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2702 Ssu-Chr3 80867325 80870206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2702 3 542 AP2-EREBP Transcription Factor Family AT1G51190 64.034 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu3g2702 AP2 2.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2702 K09285 - gmx:100788471 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2702 3 80867325 80870206 Ssu3g2702 3 80867325 80870206 ECH