Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2697 ATGACCAATTCCTACAGCTCCAATGACCTTAATTTTTGGTTGGACCTCAATTCACCATgtcttctctcttctccttcttcatcatCTCCTTCCACCAACCCACCGTTCTATTTTCCTTCCAGTTATCATAACTACACAAGTGGCATATCTTCTACTTATCAGTTCCAATCCTCTCTTCCTCAAAGAAAAGCCCTTCCCCTCCTTCATCCAAGACATGAAGAAGATCTTGAATCCTCATTCAGTGCCATGGAAGtggacaagaaaaagaaagagctAAGTACATCATCTAGCTGTTTGGATGAAGAGGACACTGTGGCTTTACACTTAGGGCTTCCAAGCACGAGTGCATCTGCTGACTTAGCTTCAAGCCTACACTCAACAGAGGCTTcagacaaagaagaaaaagtcacTGATGCTTCGGGGCTTCTGTCAAATAGAATTAACAGAGGACAATATTGGATCCCCACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCCCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTACGACTCCCTTGCTATTGCTGTGCACCGGGATGCAAGAACAACATCGACCATCCGAGAGCAAAACCTCTCAAAGACTTCAGAACCCTTCAAACCCATTTCAAGAGAAAGCATGGGACAAAGCCATTCGTGTGCAGAAAATGTTGCAAAACATTTGCTGTGAGAGGTGATTGGAGAACTCATGAAAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGGTCTGATTTCAAGCATAAAAGATCTCTTAAAGATCATATCAAGGCATTTGGATATGGACATACGGCTTATGGAAATGACTGCAACCTTGATCAAGATGATGATCAAGCAGGCTCAGAAAttgaacaagaaaattaa 981 0.4016 MTNSYSSNDLNFWLDLNSPCLLSSPSSSSPSTNPPFYFPSSYHNYTSGISSTYQFQSSLPQRKALPLLHPRHEEDLESSFSAMEVDKKKKELSTSSSCLDEEDTVALHLGLPSTSASADLASSLHSTEASDKEEKVTDASGLLSNRINRGQYWIPTSAQILIGPTQFPCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHFKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAYGNDCNLDQDDDQAGSEIEQEN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2697 326 Gene3D Classic Zinc Finger 220 304 - -
Ssu3g2697 326 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 6 326 - -
Ssu3g2697 326 Gene3D Classic Zinc Finger 166 189 - -
Ssu3g2697 326 PANTHER ZINC FINGER PROTEIN WIP2 6 326 IPR043584 GO:0003700|GO:0010468
Ssu3g2697 326 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Ssu3g2697 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Ssu3g2697 326 SUPERFAMILY beta-beta-alpha zinc fingers 233 271 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2697 Ssu-Chr3 80800557 80802761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2697 104 324 C2H2 Transcription Factor Family AT3G57670 67.063 6.69e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g2697 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2697 - - gmx:100802239 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2697 3 80800557 80802761 Ssu3g2697 3 80800557 80802761 ECH
Ssu8g0409 8 6581388 6583438 Ssu3g2697 3 80800557 80802761 ECH
Ssu7g2797 7 58164444 58166846 Ssu3g2697 3 80800557 80802761 ECH
Ssu4g1459 4 24286667 24289027 Ssu3g2697 3 80800557 80802761 ECH
Ssu8g0409 8 6581388 6583438 Ssu3g2697 3 80800557 80802761 PCT