Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2696 ATGAGTTGGAACCCACACATGGAGGTCCATTACAATAGCATTAGCTATCCCTATAATACAGCAGGAAGCTTTATCGAATATTTTGAAGGTCTCACCTATGAACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGAGAGTTCATACCCttcaaattcaagcttttacaaGTTTGGACTATCTGAACCTGAGAATACTTCATACTATCGTTACAGTCATGGCTATGAGGTAAATCATCCCGAACCACTGGTGGATGACTATAGGAGACCTTTGGAGAACTCATTGACAATCAATGAACAGACAGCAGCTGTAAGCACGGAATGGGTTGAAGATGGAAACACTGACACACGAGACACTTCTATTGAATGTCCTCGAAGACATCATAGTAATTCCAATGATTATCAGGTCATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAAGCTGTTGGAACTCAGAGCCGTGGTCTCACCCAAGAACAGATCTCCTTGCTTCCAGTGTCAAAGTACAAATGTGGGTTCTTCTTGAGGAAGAAGTCAAGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGTATCACCTTGCCATGTAAACATGTGTATCATGCTAGTTGTGGGAACAGGTGGCTTAGCATCAATAAGGCTTGTCCTATATGTTACACGGAAGTGTTTGCCGACAAGTCAAAACACAAATAA 747 0.4096 MSWNPHMEVHYNSISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSNSSFYKFGLSEPENTSYYRYSHGYEVNHPEPLVDDYRRPLENSLTINEQTAAVSTEWVEDGNTDTRDTSIECPRRHHSNSNDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGNRWLSINKACPICYTEVFADKSKHK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2696 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Ssu3g2696 248 Pfam Ring finger domain 195 236 IPR001841 -
Ssu3g2696 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Ssu3g2696 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 - -
Ssu3g2696 248 SUPERFAMILY RING/U-box 189 243 - -
Ssu3g2696 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Ssu3g2696 248 SMART ring_2 196 236 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2696 Ssu-Chr3 80752275 80757985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2696 5 247 C3H Transcription Factor Family AT3G63530 42.972 1.73e-64 199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2696 3 80752275 80757985 Ssu3g2696 3 80752275 80757985 ECH
Ssu8g0413 8 6634473 6641223 Ssu3g2696 3 80752275 80757985 ECH
Ssu8g0413 8 6634473 6641223 Ssu3g2696 3 80752275 80757985 PCT