Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu3g2690 | ATGGTGTCGACGGCGATTGAGGAAGTGCGAACTCTGTGGATTGGGGATTTGCAGTACTGGGTGGACGATTCGTACCTTTCTCAGTGCTTCGCCCACAGCGGCGAAGTTGTTTCCATCAAAATCATTCGCAACAAGTTGACGGGCCAGCCCGAGGGGTACGGCTTCGTCGAGTTCGTATCCCACGCCGCAGCGGAAGCCTTTCTTCGCACCTACAACGGCAGTCAAATGCCCGGCACGGAACAAACCTTCAGGCTCAATTGGGCCTCGTTCGGCGACTCTGGGCCCGACCACTCCATCTTCGTGGGCGATCTCGCTCCCGACGTCACCGATTTCCTCCTCCAGGAGACTTTTCGGGCCCATTACCCTTCCGTCAAAGGGGCCAAAGTCGTGACCGACCCCGCCACGGGCCGGTCCAAGGGATATGGGTTCGTTAAGTTCGCGGATGAGACCCAGAGGAACCGCGCCATGACCGAAATGAACGGTGTTTATTGCTCCACTCGCCCAATGCGTATCAGCGCCGCTACACCTAAGAAAACCACTTCTTTTCAAAACCAGTATGCTCCACCTAAAGCTATGTATCAATTTGCAGCATACACTACTCCGGTGAATACTGTTACACCGGATAATGATGTGAATAATACCACTGTTTTTATTGGTAATTTGGATCTTAATGTGATGGAGGAGGAGCTTAAGCAAACGTTTGTGCAATTTGGAGATATTGTTTCGGTCAACATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAactagAGCGTCTGCTGAAGATGCCATTCAGAGGATGCAGGGGAAGATAATAGGTCAACAAGTGATCCAGATTTCTTGGGGTAGTGCCTTGAATGCTAGACAGGACGTACCTGGTGGCTGGGGCTCACAGATGGATCCAAATCAATGGAGTGCCTACTATGGATATGGACAGGGTTATGAAGCATATGCTTATGGTGCTACTCATGATCCCTCCTTGTATGCTTATGGTGCATATGCTGGTTATGCACAATACCCTCAACAGGTTGAAGGTGTTCAAGACATGTCAGCAGTGTCTATGCCTATGGAGGAGTTGTATGATCCACTGGCAATGCCTGATGTCGATAAATTAAATGCTGCATATCTTTCAATACACGGAAATGCCATTTTAGGGCGGTCCCTTTGGCAGAAAACTTCGCAATCTTTACAGCAGGCCTAG | 1206 | 0.4934 | MVSTAIEEVRTLWIGDLQYWVDDSYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHAAAEAFLRTYNGSQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADETQRNRAMTEMNGVYCSTRPMRISAATPKKTTSFQNQYAPPKAMYQFAAYTTPVNTVTPDNDVNNTTVFIGNLDLNVMEEELKQTFVQFGDIVSVNIYAGKGYGYVQFGTRASAEDAIQRMQGKIIGQQVIQISWGSALNARQDVPGGWGSQMDPNQWSAYYGYGQGYEAYAYGATHDPSLYAYGAYAGYAQYPQQVEGVQDMSAVSMPMEELYDPLAMPDVDKLNAAYLSIHGNAILGRSLWQKTSQSLQQA | 401 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu3g2690 | 401 | SUPERFAMILY | RNA-binding domain, RBD | 199 | 315 | IPR035979 | GO:0003676 | |
Ssu3g2690 | 401 | CDD | RRM1_SECp43_like | 11 | 91 | - | - | |
Ssu3g2690 | 401 | Gene3D | - | 96 | 173 | IPR012677 | - | |
Ssu3g2690 | 401 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 12 | 80 | IPR000504 | GO:0003723 | |
Ssu3g2690 | 401 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 99 | 164 | IPR000504 | GO:0003723 | |
Ssu3g2690 | 401 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 216 | 279 | IPR000504 | GO:0003723 | |
Ssu3g2690 | 401 | Gene3D | - | 9 | 89 | IPR012677 | - | |
Ssu3g2690 | 401 | PANTHER | POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED | 5 | 344 | - | - | |
Ssu3g2690 | 401 | CDD | RRM2_SECp43_like | 96 | 175 | - | - | |
Ssu3g2690 | 401 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 214 | 286 | IPR000504 | GO:0003723 | |
Ssu3g2690 | 401 | SMART | rrm1_1 | 215 | 282 | IPR000504 | GO:0003723 | |
Ssu3g2690 | 401 | SMART | rrm1_1 | 98 | 172 | IPR000504 | GO:0003723 | |
Ssu3g2690 | 401 | SMART | rrm1_1 | 11 | 86 | IPR000504 | GO:0003723 | |
Ssu3g2690 | 401 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 178 | IPR035979 | GO:0003676 | |
Ssu3g2690 | 401 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 5 | 344 | - | - | |
Ssu3g2690 | 401 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 90 | IPR000504 | GO:0003723 | |
Ssu3g2690 | 401 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 97 | 176 | IPR000504 | GO:0003723 | |
Ssu3g2690 | 401 | Gene3D | - | 198 | 292 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu3g2690 | Ssu-Chr3 | 80648349 | 80651281 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu3g2690 | 9 | 303 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 25.163 | 1.98e-22 | 97.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu3g2690 | - | - | gmx:100813616 | 721.465 |