Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2689 ATGGAGATCATGCCAACTTTGGAGAGAGACCTGAGTAACATGAGGGAGTATTATGAGAGTGGAAAGACTAAGGAAGCGTCTTGGAGAGAATCGCAGATCAAAGGGTTGCATCGTTTCCTCATGGAAAAACAGGAAGATATCATGAAGGTCCTCATGCAAGATTTAGGGAAACATCAACTTGAAGCTTTCAGAGACGAGATAGGAACCTTGATGAAGACCTTAAATCTGGCATTGAAGTCTCTGAAAAATTGGATGGCAGGCAAAAAGGCCGAGTTGCCACAGATAGCATTGCTCACTAGTGCAGAAATTGTTCCCGAGCCACTTGGTCTGGTCCTCATTATTTCATCTTGGAATTTCCCCTTCGGACTATCCTTGGAGCCACTGATAGGAGCAGTAGCTGCGGGAAACGCAGCAGTGTTAAAGCCTTCAGAGTTGTCTCCAGCGTGTGCTTCTCTACTTGCTTCTAGTCTCGCCACTTACTTGGACAAAAAAGCCATTAAGGTGATCCAAGGAGGACCACAAGAGACCCAGCAACTACTTCAGCAAAGATGGGACAAAATCTTCTTTACAGGAAGTGCACGTGTGGGGCGGATTGTGATGTCTGCTGCTGTGGAGAATTTGACTCCTGTTACTCTGGAGTTGGGTGGAAAATGCCCTGCAGTTGTTGACTCCCTCTCATCTTCCTGGGATGTAGAGGTCACTGTGAAGAGAATTATTGTGGGGAAATATGGAACCTGTGCTGGTCAAGCATGCATAGCAATCGATTATATCCTAGTGGAAAAGGGGTACTGTTCAAAACTGgtGGAATTGATGAAGGTGCGGATCAAGAAAATGTTTGGGGAGAACCCACAACATTCCAAAACTATTGCCAGGATAGTTAATGAACACCACTTCTCAAGATTGAAGAATCTTCTTACTGATAAAAATGTCAAGGAATCTGTTGTTTATGGTGGTTCAATGGACGAAGAAAACTTATTTATAGAGCCAACTATCTTGGTGGATCCCCCACTGGAAGCAGCAATTATGTCGGAGGAAATTTTTGGCCCACTGCTTCCAATTATTACTTTGGAGAAGATTGAGGACAGTATTAAATTCATGAACTCTAGGCCTAAGCCTCTTGCCCTTTATGTTTTCACCAAAAACCAAACACTGCAGAGAAGAATGATATCTGAAACATCATCTGGCAGTGTGACTTTCAACGATACAATTCTACAATATGCAGCTGATACTCTCCCATTTGGAGGAGTGGGAGAAAGTGGGTTTGGCAGGTACCATGGGAAGTTCTCCTTTGACGCATTTAGCCACCAGAAAGCAGTTGTAAGAAGAAGTTTCCTCACTGATTTTTGGTATAGATATCCTCCATGGACACTAAATAAGTTACAACTACTTGAAGTCTCTTACAATTATGATTATCTGGGATTGCTCCTTGTCCTGCTGGGCTTAAAGAGACCATCAAAACGCTTAATCCTAGATCATATTTAG 1482 0.4305 MEIMPTLERDLSNMREYYESGKTKEASWRESQIKGLHRFLMEKQEDIMKVLMQDLGKHQLEAFRDEIGTLMKTLNLALKSLKNWMAGKKAELPQIALLTSAEIVPEPLGLVLIISSWNFPFGLSLEPLIGAVAAGNAAVLKPSELSPACASLLASSLATYLDKKAIKVIQGGPQETQQLLQQRWDKIFFTGSARVGRIVMSAAVENLTPVTLELGGKCPAVVDSLSSSWDVEVTVKRIIVGKYGTCAGQACIAIDYILVEKGYCSKLVELMKVRIKKMFGENPQHSKTIARIVNEHHFSRLKNLLTDKNVKESVVYGGSMDEENLFIEPTILVDPPLEAAIMSEEIFGPLLPIITLEKIEDSIKFMNSRPKPLALYVFTKNQTLQRRMISETSSGSVTFNDTILQYAADTLPFGGVGESGFGRYHGKFSFDAFSHQKAVVRRSFLTDFWYRYPPWTLNKLQLLEVSYNYDYLGLLLVLLGLKRPSKRLILDHI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2689 493 PANTHER ALDEHYDE DEHYDROGENASE 5 488 IPR012394 GO:0006081
Ssu3g2689 493 Pfam Aldehyde dehydrogenase family 15 439 IPR015590 GO:0016491
Ssu3g2689 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 216 419 IPR016163 GO:0016620
Ssu3g2689 493 PIRSF ALDH 2 475 IPR012394 GO:0006081
Ssu3g2689 493 SUPERFAMILY ALDH-like 12 456 IPR016161 GO:0016491
Ssu3g2689 493 PANTHER ALDEHYDE DEHYDROGENASE 5 488 - -
Ssu3g2689 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 15 437 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2689 Ssu-Chr3 80639526 80642601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2689 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 52.893 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2689 K00128 - gmx:100817701 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2689 3 80639526 80642601 Ssu3g2689 3 80639526 80642601 ECH
Ssu8g0421 8 6783588 6786263 Ssu3g2689 3 80639526 80642601 PCT