Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2685 ATGAGGAAGCCCGAGGCATCTGGAAAAAACAACTCCAACAATAACAAGCTTAGAAAGGGGTTGTGGTCTCCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTGGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGACCTGATCTTAAACGAGGTGCATTCTCACCACAAGAAGAGGAACTCATCATCCATTTGCATTCTCTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCTGGGCGAACTGACAATGAAATTAAGAACTTTTGGAATTcaacaataaagaaaagactCAAGAACTTGTCGTCCACAACCTCACCAAACGCAAGCGAGTCCTCATATGAGCCTAACAAAGACCTTAATGTGACAGGGTTTAATACTTCTTCTAATACCCAAGATCAACATGCTGATTTTATGCCTATGTTCAATTCATCATCTCCATCACCATCGATGCATGCCACAGTTCTCAATTCCATAATTGACAGGTTGCCTATGCTAGAGCATGGACTAAACATGCCAGCTGCTGGTGGATTCTTCAACGGCACAGGACCATGCTTCTCACAAAGTGGAGTTGACAACAAAGGTTTTTATTTGGAAAACGGAGGAGTATTTGCGAGTGTAAATATTGGGGCAGAAGGGGAGATGTATATTCCTCCTCTAGAGAGTGTTAGCACTATTTCTGACCATAACCTGAAAGTGGAGAGTACATGCAACACAGATACTAACAATAgttactttgatgacataaacAGTATCATCGTCAATAACTGCAACATTAGCAACAATAAGAGAGCTGAAAATAGGGCTGGGGGggaaaatttgtttcaagaagAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAAAGACGTTTCATCCTTTccctttcttgatttttcaaattga 981 0.3976 MRKPEASGKNNSNNNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTTSPNASESSYEPNKDLNVTGFNTSSNTQDQHADFMPMFNSSSPSPSMHATVLNSIIDRLPMLEHGLNMPAAGGFFNGTGPCFSQSGVDNKGFYLENGGVFASVNIGAEGEMYIPPLESVSTISDHNLKVESTCNTDTNNSYFDDINSIIVNNCNISNNKRAENRAGGENLFQEELTMGEWDLEELMKDVSSFPFLDFSN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2685 326 CDD SANT 22 66 IPR001005 -
Ssu3g2685 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Ssu3g2685 326 PANTHER MYB TRANSCRIPTION FACTOR 9 325 - -
Ssu3g2685 326 Gene3D - 16 72 - -
Ssu3g2685 326 MobiDBLite consensus disorder prediction 123 166 - -
Ssu3g2685 326 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Ssu3g2685 326 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Ssu3g2685 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Ssu3g2685 326 SMART sant 18 68 IPR001005 -
Ssu3g2685 326 SMART sant 71 119 IPR001005 -
Ssu3g2685 326 CDD SANT 74 114 IPR001005 -
Ssu3g2685 326 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Ssu3g2685 326 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Ssu3g2685 326 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2685 326 PANTHER MYB DOMAIN PROTEIN 55 9 325 - -
Ssu3g2685 326 Gene3D - 73 144 - -
Ssu3g2685 326 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2685 Ssu-Chr3 80589880 80591874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2685 1 244 MYB Transcription Factor Family AT5G12870 53.061 8.97e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g2685 Myb_DNA-binding 9.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2685 K09422 - gmx:100786151 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0422 8 6816122 6818722 Ssu3g2685 3 80589880 80591874 PCT