Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2681 ATGGGTGCTCGTTGCTCTAAATTCCCTCCCTGCTGGTGGCCTTCCCACATCAAATCAAACCTTTGTAACTTGTCTGAGAATGGTGACCTTCTTTTTCCCACTAACACAACAAGAGAAGAAGATGATGATGATGGGAGGAGGAATGAGAAGGATCCTTGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGCTGAGGGTTGCCACCTCAGGATTTTCACAGGACAACATCGTCTCGGAGCACGGTGAGAAGGCTCCCAATGTTGTCTACAGAGGGAGGCTTGAGGATGATAGGTTGGTTGCTGTGAAGCGCTTCAACAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGAGGAGGCACGTGCAGTGGGGCAGCTAAGGAATGAGCGATTAGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAGAGGTTGCTTGTGGAAGAGTTCATGCCCAATGAAACTCTCTCCAAACATCTTTTTCATTGGGAAACCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTCAATGCTTATAGAATTTTGTTTGATCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACTCCTCCGGAGTACTTGAGGACAGGAAGGATCACCCCTGAAAGTGTAGTTTACAGTTTTGGCACCCTATTGCTTGATCTTCTGAGTGGAAAGCATATCCCACCCAGTCATGCACTTGACCTTATACATGGAAAAAATTTTCTGTTGCTGATGGACTCATGTTTGGAAGGTCATTTCTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCACGTTGTTTACAATATGAACCTCGTGAGAGACCAAATGTTAAGTCGCTTGTGACTGCTCTAACTTCTCTTCAGAAAGCAACTTCGGTACCATCATATGTTTTAATGGGTATACCGGATAGGAGTCTGTCCTCAAAGGAAACAGTTTCATTGACACCTTTTGGCGATGCTTGTTCAAGAAGAGATCTGACTGCAATACATGAAATTTTGGAAAAGGTGGGCTACAAAGATGATGAAGATGTTGCAAATGAGCTGTCTTTCCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTTCATGCTAGAGACTTCTCTATGGCCATTGACTGCTATACCCAATTCATCGATGGTGGAACAATGGTATCACCAACGGTGTATGCCCGGCGCTGCTTATGCTACCTGATGAATGACATGGCACAAGGAGCACTTGGAGATGCCATGCAAGCTCAATCAATATCTCCCACCTGGCCCACTGCATACTATCTTCAAGCAGCTGCTCTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGCACAACACTGGAAAACAGGAAGTATAGAAATTGA 1521 0.4471 MGARCSKFPPCWWPSHIKSNLCNLSENGDLLFPTNTTREEDDDDGRRNEKDPWGGFSEYSLDQLRVATSGFSQDNIVSEHGEKAPNVVYRGRLEDDRLVAVKRFNKSAWPDSRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVEEFMPNETLSKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVVYSFGTLLLDLLSGKHIPPSHALDLIHGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTSLQKATSVPSYVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAIHEILEKVGYKDDEDVANELSFQMWTNQIQETLNSKKQGDSAFHARDFSMAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMAQGALGDAMQAQSISPTWPTAYYLQAAALFSLGMDNDAQESLKDGTTLENRKYRN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2681 506 MobiDBLite consensus disorder prediction 35 53 - -
Ssu3g2681 506 MobiDBLite consensus disorder prediction 32 56 - -
Ssu3g2681 506 ProSiteProfiles Protein kinase domain profile. 74 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2681 506 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 506 IPR045845 GO:0004672|GO:0009742
Ssu3g2681 506 Gene3D Phosphorylase Kinase; domain 1 45 149 - -
Ssu3g2681 506 Pfam Protein tyrosine and serine/threonine kinase 87 325 IPR001245 GO:0004672|GO:0006468
Ssu3g2681 506 Gene3D Transferase(Phosphotransferase) domain 1 151 342 - -
Ssu3g2681 506 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 1 506 - -
Ssu3g2681 506 SUPERFAMILY TPR-like 403 503 IPR011990 GO:0005515
Ssu3g2681 506 SUPERFAMILY Protein kinase-like (PK-like) 53 333 IPR011009 -
Ssu3g2681 506 Gene3D Tetratricopeptide repeat domain 399 506 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2681 Ssu-Chr3 80553077 80556629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2681 59 337 Glycoside Hydrolase AT3G07070 34.641 3.51e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Ssu3g2681 PK_Tyr_Ser-Thr 7.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2681 - - gmx:732542 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2681 3 80553077 80556629 Ssu3g2681 3 80553077 80556629 ECH