Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2678 ATGGACGGTGGACATATGCACGGCATGGGAGGGATGGCGCCGACGCCGCCATCGACTAATGACAGCAGCATGATGATGCATCATCataagatgatgatgatgatgcacaTGACCTTCTTCTGGGGGAAAGACGCGGATATTCTGTTCAACAACTGGCCCGGGGGCAAATCTGGCATGTACGCGTTGGCCCTGGTCTTTGTCTTCGTCATGGCCGTTTTCGTCGAGTTGCTCTCCCACACCCGGTTCATCAAACCCGGTTCGAACCACGTCGTGGCCGGTCTGATTAAAACCCTCTTGCACGTCCTTAGGATTGGCCTCGCTTATTTGGTCATGCTCGCCCTCATGTCTTTCAACGGCGGTGTCTTCTTGGTCGCTGTGCTCGGTCACGCCCTCGGATTTTTCCTTTCCACCATGGCTTTCGATAAACCGCCCCACGACGAGGGCTTCGATCTTCCTCCAATTTCTTGTTAA 471 0.5202 MDGGHMHGMGGMAPTPPSTNDSSMMMHHHKMMMMMHMTFFWGKDADILFNNWPGGKSGMYALALVFVFVMAVFVELLSHTRFIKPGSNHVVAGLIKTLLHVLRIGLAYLVMLALMSFNGGVFLVAVLGHALGFFLSTMAFDKPPHDEGFDLPPISC 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2678 156 Pfam Ctr copper transporter family 92 135 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu3g2678 156 Pfam Ctr copper transporter family 37 81 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu3g2678 156 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 3 155 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu3g2678 156 PANTHER COPPER TRANSPORTER 6-LIKE 3 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2678 Ssu-Chr3 80514028 80514498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2678 38 156 Inorganic Solute Cotransporters AT5G59030 52.419 2.27e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2678 K14686 - gmx:100306175 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2678 3 80514028 80514498 Ssu3g2678 3 80514028 80514498 ECH