Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2663 ATGGATCATGGCCTTGGCATTGGCACCCAGCTCCCATTCTTTAATTTCCACCAGTTATCTATGACACAATTTATCCAGTTGAGGTTTGAGGAGGAAAGGGTTGGTAAACCACCACCATTGGTGTTTGTCTTCCATGGCCACTACGATGGCTGTATAGGTGGCCTTCCAAAGTATGGTGGCGGTGTAGGTGACCTTCCATTAAGGGGTTACAAAATAGCTGAGATACGGGTACCcattaaaagtaaatatgtgTATGCATTTGCCAAGCATGTCAATGATCTTGGAAGTATAAAGGTCAAAGGGATTCCTACGTTTATCCATAGGCGGATGGGTCATGGGTCGTCCTATGATGTTGGTATCATGAGGGTGCAAAGCAAGGAGCGGAGGACACTCGAGATGGTTCATAGGGAGGCACTAAAAGGGTTGTTGCAGCTATTATCAGCGTTGGCCAAGGTTTTGGAGGAGGGGGAATGGAGGAGGGAGGGGTTGCgagagaggaaggaagaggAGTAG 513 0.4483 MDHGLGIGTQLPFFNFHQLSMTQFIQLRFEEERVGKPPPLVFVFHGHYDGCIGGLPKYGGGVGDLPLRGYKIAEIRVPIKSKYVYAFAKHVNDLGSIKVKGIPTFIHRRMGHGSSYDVGIMRVQSKERRTLEMVHREALKGLLQLLSALAKVLEEGEWRREGLRERKEEE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2663 170 PANTHER BNAA10G12290D PROTEIN 2 126 - -
Ssu3g2663 170 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 2 126 IPR039910 -
Ssu3g2663 170 Coils Coil 153 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2663 Ssu-Chr3 80312644 80315468 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2663 122 149 FH2 protein (formin) Gene Family AT1G31810 78.571 7.99e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2663 - - sly:101244592 145.591