Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2655 ATGGGGGAAGAGGTGAAGACGAGCGAGTACGATGAAGAGCGCGTGATGGAGTGGGAGGTGGGTCTCCCCACCGCCAACGATCTCACCCCTCTCTCTCAGCCGCTGATCCCGCCGGAGCTGGCCTCCGCCTTCAGCATCTCGCCGGAGCCCCACCGCACCCTCCTCGACGTCAACCGCGCCTCCCGCAGCACGCTCTCCACGCTCCGCGGCGGCGGCGGGAGCGTGCACCAGGCCTTCTCCTCCTCCaacaaccaccaccacccctCCGACGACGgcgaggaggaggaggaggaggaggacgaCACCGATCGCGACGGCTCAGGGTCCGATTCCCGGAAGCAGCGGAAGATCGACTGCGCGGAGGAGGCGGACTCGGCGGTGCGGACGGAGACCTCGGCGGAGCGGACGGCGGTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTGGACGTGGTGGCCCACCTCGGGATCAAGAACGCGGTGCCGAAGACGATCATGCAGTTGATGAACGTGGAGGGGTTGACCCGCGAGAATGTGGCGAGCCATCTCCAGAAGTATCGCCTCTACTTGAAGCGGATGCAGGGTCTCTCCAACGAGGGTCCTTCTTCTTCGGATCAGTTATTCGCGTCCACGCCTGTGCCTCAGAGTTTGCATGACTCTGCTCCTCCCAGTGCCCATTCTCATGGCCATGGCCATGGCAACGGACATCTCCCTGTCCCCATTCCCATGCCCTATCCGCCTCACGTGATGTCCATGCCTCTCCTCGGCATGCCCCATGCCCATGGCCACATGGGCATCCCCATGCCCACTTCTTCCGCCACCTCAGCGTATCATCCTTATAACATGTTGCACCAGAGGGATTGGCCTCACCTTGCTCCCGGTGATAAATGA 906 0.6049 MGEEVKTSEYDEERVMEWEVGLPTANDLTPLSQPLIPPELASAFSISPEPHRTLLDVNRASRSTLSTLRGGGGSVHQAFSSSNNHHHPSDDGEEEEEEEDDTDRDGSGSDSRKQRKIDCAEEADSAVRTETSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHDSAPPSAHSHGHGHGNGHLPVPIPMPYPPHVMSMPLLGMPHAHGHMGIPMPTSSATSAYHPYNMLHQRDWPHLAPGDK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2655 301 MobiDBLite consensus disorder prediction 64 85 - -
Ssu3g2655 301 MobiDBLite consensus disorder prediction 201 227 - -
Ssu3g2655 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 141 193 IPR006447 GO:0003677
Ssu3g2655 301 MobiDBLite consensus disorder prediction 201 245 - -
Ssu3g2655 301 MobiDBLite consensus disorder prediction 64 136 - -
Ssu3g2655 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 293 IPR044841 GO:0003700|GO:0006355
Ssu3g2655 301 MobiDBLite consensus disorder prediction 105 136 - -
Ssu3g2655 301 Pfam Myb-like DNA-binding domain 144 192 IPR001005 -
Ssu3g2655 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 196 IPR017930 -
Ssu3g2655 301 SUPERFAMILY Homeodomain-like 138 197 IPR009057 -
Ssu3g2655 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 293 - -
Ssu3g2655 301 Gene3D - 136 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2655 Ssu-Chr3 80239284 80240189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2655 1 271 G2-like Transcription Factor Family AT3G46640 56.164 5.03e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu3g2655 Myb_DNA-binding 1.2e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2655 3 80239284 80240189 Ssu3g2655 3 80239284 80240189 ECH