Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2653 ATGAATTCGGACACGCAACCCGGAACGGCGTCGTACTGGTGCTACAGTTGCACCCGCTTCGTGCACCTCTCCGCCCAATCCACCATCGTCTGCCCCCACTGCGAAAGCGGTTTCGTCGAAGAGATCCGCGCAGACCCGTCGCCGCGCCATCGCGTCAGCCCCTTCCCCGACGACCTACTCTCCCTCCGCCGCCAGGGCttccgccgccgccgccgcgaCGCCGGTAATCGCTCCCCCTTCAACCCCGTCATCGTCCTCCGCGGCCCCGGCGACGCAGACGCCGCCGCCCCCGACCACGACGGCGCCAGCACCTTCGAGCTCTTCTACGACGACGGCGACGGCTCCGGCCTCCGCCCCCTCCCGCCGGCCATGTCCGAGTTCCTCCTCGGCTCCGGCTTCGACCGCCTCCTCGAGCAGTTCGCGCAGATCGAGGTGAACGGCTTCGGCCGCCTGGAGAATCCGCCGGCGTCGAAGGCGGCGATCGAGTCCATGCCGACCGTCGGGATCGGCGAGGCGCACGTCGACACCGACGCGCACTGCGCCGTCTGCAAGGAGGCGTTCGAGCTCCACGCGGAGGCGCGTGAGTTGCCGTGCAAGCACATCTACCACTCCGATTGCATCCTCCCGTGGCTCTCCATGCGGAACTCCTGCCCCGTGTGCCGCCACGAGCTCCCTTCGGATTTGGAAACTAGGGTTCCGAGCCAGATCGACGAGGAAGCGATAGGGTTAACGATTTGGAGGCTCCCCGGCGGGGGATTCGCCGTGGGCCGATTTTCCGGCGGCCGGAGGGCCGGCGAGAATCACTTCCCGGTGGTGTACACGGAGATGGACGGCGGACTGAACACGAACGGAGCTCCGAGGAGAATTTCTCGGTCGGTGAGAAGCACTAGGGCTAGGGAGAGTCGAGGGTTCGGTAGGGCTATTCgcaatttcttttcattctttggAAGACTCGGTAATGGTTCTAGAAGCTCTTCTAATTCTGAGGATGGGTCTGTGAGTAGAAGCCGTAGTCAAGTGAGTTCATTGTTCAATAGAAGCTCCCGGAGACATGGCAGGACTTGGGTCTTGCATGATTGA 1080 0.6157 MNSDTQPGTASYWCYSCTRFVHLSAQSTIVCPHCESGFVEEIRADPSPRHRVSPFPDDLLSLRRQGFRRRRRDAGNRSPFNPVIVLRGPGDADAAAPDHDGASTFELFYDDGDGSGLRPLPPAMSEFLLGSGFDRLLEQFAQIEVNGFGRLENPPASKAAIESMPTVGIGEAHVDTDAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRVPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGENHFPVVYTEMDGGLNTNGAPRRISRSVRSTRARESRGFGRAIRNFFSFFGRLGNGSRSSSNSEDGSVSRSRSQVSSLFNRSSRRHGRTWVLHD 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2653 359 Pfam Protein of unknown function (DUF1117) 241 349 IPR010543 -
Ssu3g2653 359 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Ssu3g2653 359 SMART ring_2 180 220 IPR001841 -
Ssu3g2653 359 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Ssu3g2653 359 SUPERFAMILY RING/U-box 160 228 - -
Ssu3g2653 359 CDD RING-H2_RNF126_like 180 221 - -
Ssu3g2653 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 7 305 - -
Ssu3g2653 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 305 - -
Ssu3g2653 359 MobiDBLite consensus disorder prediction 321 345 - -
Ssu3g2653 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 227 IPR013083 -
Ssu3g2653 359 Pfam Ring finger domain 179 221 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2653 Ssu-Chr3 80180668 80181747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2653 119 227 C3H Transcription Factor Family AT5G01980 47.706 7.56e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2653 - - gmx:100792874 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0438 8 7018346 7019494 Ssu3g2653 3 80180668 80181747 PCT