Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2652 ATGAGTTTTGTCTTCCGAGGGAGTAGGGGAGATATAGAAAGCGGCTTTTCAGAATATGTTCCTGAAAGAACCTTGATGCGGGTTCATCCAGCTCGGCCAGTTAATGGCAATTCTCTAGCTTTTCTCATCACGGTTATTTTGATATTCATGATATTAAACTCCCCTCAGATGTTACATCATTTTTGCTTCAAGCACAGGCCAGGGCTCATGCTGCAGCAGGCCTCTGGGTTGCTTGGCCATACTGAACTCCGTCTTCACATGCCACCATCAATTGCAATTGCAACCAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGATTATGACACTTTGAGAGCTCTGGACTCTGATAATGCTTCTAGTACTCGTTCAATGACCGAGGAAGAAATAAATGCCTTGCCTACTCACACATATAAAGTTCCAATTAAACAAGAATCTGGAGGAACAGAGGCAGTTGTCAACGGTACAGTAGAGGAGCTGACGTGTACTATATGCTTGGACCAAGTTAAGAGGGGGGAGCTTGTTCGTAGCTTGCCATGCTTGCATCAGTTTCATGCCAACTGCATTGATCCATGGCTCCGTCAACAAGGAACATGTCCCGTGTGCAAATTTAGAATAGGGTCGGGCAGTGGGGGAAACATGGAGAACGAGTCCGATGGTTCAGATATTGCGTAG 705 0.4567 MSFVFRGSRGDIESGFSEYVPERTLMRVHPARPVNGNSLAFLITVILIFMILNSPQMLHHFCFKHRPGLMLQQASGLLGHTELRLHMPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDNASSTRSMTEEEINALPTHTYKVPIKQESGGTEAVVNGTVEELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFRIGSGSGGNMENESDGSDIA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2652 234 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 61 - -
Ssu3g2652 234 SMART ring_2 172 212 IPR001841 -
Ssu3g2652 234 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
Ssu3g2652 234 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 73 233 - -
Ssu3g2652 234 PANTHER TARGET OF ERK KINASE MPK-1 1 61 - -
Ssu3g2652 234 CDD RING-H2_PA-TM-RING 171 213 - -
Ssu3g2652 234 SUPERFAMILY RING/U-box 167 217 - -
Ssu3g2652 234 Pfam Ring finger domain 171 213 IPR001841 -
Ssu3g2652 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 217 IPR013083 -
Ssu3g2652 234 PANTHER TARGET OF ERK KINASE MPK-1 73 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2652 Ssu-Chr3 80162400 80166044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2652 1 234 C3H Transcription Factor Family AT3G55530 59.489 1.84e-103 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2652 K16283 - gmx:100805406 370.933