Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2646 ATGCTCTCTACGGATTcccttttggaaaattttcctGGTTCCGTGAAtggatttatatttgaaaacgGTCCTATCTCGGGGTTTTCGAATCAGAACCCTGCAAGTGGGTTCAAGTTGGATGATTCACGTTCCCCTTCAGAATCTGCCACTGATTCTGGTCCATCTTCTGGGACGAGCTCAAATGGAGAACATGCAGAGAGTACTAAGCATTCCAATCCCATTCTCAGATACATAAGTGACATCCTCATGGATGAAGAGGATGATTTAGAGCGCAAACCCTGCATGTTGCAGGATTGTTTGAGGCTTCAAGCTGCTGAAAAATCATTCTATGACGCGCTGGTTCATAGCTACCCTTCATCACCTCATCAATTTAATGATAACCCTGACCCAGATGATAATTTTGGTGGAACTACTAGTTCTGAGAGTCATAGCAGTTATAGTTATACCACTGATAATTCCTGTGAGTCTGATTGGTTTAACGGTGCTGCTGATTTTGAGTCTTCTTTCCTGCAAAGATCCTTACATGATTCCCCGGAAAGTGCCTATGTAGCTCCTGATCTGTTTAGAGAGAAACTAGCTGGGGTCCATTTTTCAAATGGAGCCTGGAATATGATTCACTCGAAGAACAAGCCACGCATGATTGAAGAAGGCGTGATGCGGGGTTCTATAACAGCCACAGGATCAAGGGAGAAGAGAAGCCATCTCATGAATGATATCTCACATGGAGAAGAGGAAAGAAGCAACAAGCTTTCAGCTGTGTACTCTGATGATTCAGAGCCAACTAGCATGTTTGATGATGTGCTGCTTTGTAAGGATGGTAAGAGTCCAGCCATTTTTTATGCTGACCGTGAACCACCATCATTACAGATTGCTGACTCGGGAGGATCTAATGGAAAGACAACACGTTCGAAGAAAGGTTCCAACAAGGGGACAAGTGCAAGTGCAACGGTAGATTTATGGACTTTGCTAACTCAATGTGCACAGGCTGTGGCTAGCTTTGACCAAAGGACTGCGAATGAAATACTCAAGCAGATTAGGCAGCACTCTTCATCTTTTGGCGATGGACTTCAGCGTTTGGCTCATTACTTTGCTGATGGCCTTGAGACACGGTTAACTGCTGGGACACCAAAGTTCATTCTCTTTCAGTCAGCATCTGCCGCAGATATGTTGAAAGCTTATAGAGTATATATTACAGCATCACCATTTCACAGGATGTCAAATTTCTTGGCTAACCGCACTATTCTGAAGCTAGCAGAAAATGAAAGCAGTCTTCACATTATTGACTTTGGGATTAGCTATGGTTTCCAGTGGCCTTGTCTCATCCACCAGTCTTTCAGAGAGGGCAGGCGGGCCTCCAAAGCTTCGTATTACTGGAATTGA 1380 0.4312 MLSTDSLLENFPGSVNGFIFENGPISGFSNQNPASGFKLDDSRSPSESATDSGPSSGTSSNGEHAESTKHSNPILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDALVHSYPSSPHQFNDNPDPDDNFGGTTSSESHSSYSYTTDNSCESDWFNGAADFESSFLQRSLHDSPESAYVAPDLFREKLAGVHFSNGAWNMIHSKNKPRMIEEGVMRGSITATGSREKRSHLMNDISHGEEERSNKLSAVYSDDSEPTSMFDDVLLCKDGKSPAIFYADREPPSLQIADSGGSNGKTTRSKKGSNKGTSASATVDLWTLLTQCAQAVASFDQRTANEILKQIRQHSSSFGDGLQRLAHYFADGLETRLTAGTPKFILFQSASAADMLKAYRVYITASPFHRMSNFLANRTILKLAENESSLHIIDFGISYGFQWPCLIHQSFREGRRASKASYYWN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2646 459 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 29 450 - -
Ssu3g2646 459 MobiDBLite consensus disorder prediction 31 71 - -
Ssu3g2646 459 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 29 450 IPR005202 -
Ssu3g2646 459 MobiDBLite consensus disorder prediction 120 146 - -
Ssu3g2646 459 ProSiteProfiles GRAS family profile. 310 459 IPR005202 -
Ssu3g2646 459 MobiDBLite consensus disorder prediction 290 312 - -
Ssu3g2646 459 MobiDBLite consensus disorder prediction 286 312 - -
Ssu3g2646 459 Pfam GRAS domain family 321 443 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2646 Ssu-Chr3 80094246 80095625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2646 11 448 GRAS Transcription Factor Family AT2G29060 37.168 1.89e-62 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g2646 GRAS 1e-35 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2646 - - gmx:100815586 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0448 8 7095282 7097309 Ssu3g2646 3 80094246 80095625 PCT