Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2645 ATGGCTATGCTTATAACAGTCAACAGGGCTGCTGCTAGTGTGCTACTGTTATGTGATTGTGACTATAAACTAACGCAACCTCaattcttccttctttctttttcgaaACCACTAATAAATTATGGCGAGTGTTCATGTTCCATGAATTCGTTCATGCTTTCTCTTTCTTCGCACAATAAAAACCTATTTCAGTGTTTTCGAGTGTTACGAATGGAGGCAAACTTTCCCGGAGCTGACCTGTTCGCTGAAGAGCAGGGCATAGCGCATCTCTCGGACTCGCTTGGTTTTGCATCGAGGGATCCTTCGCTGGAAGACAACGACTTCTCAGAAACTGCAAAGTTCATAAGCCAGGTCCTCATGGAAGAGAGCGTCGAACAGAGGCCATTCTATGACTCACTCTCCTTGCAAGTTACCGAGAAATCCTTCTACGACGCTCTCACTGGCAACAACAATGAAAATTCTCGTCAGTTAAGGCTTCCTTCTCCACATTCTGTTTCCGTTTCTGCTTCTGCTTTTCAGTTTAACCCCCACGCCCTTTCTCAACCACCACCTTCAATTACTGCCAGTCATGGACTCTCAGGTTTGGATTCTTCTATTGCCAAACTGTTGGCGCAGAATATGTGCAGTGATGCTGATTCTGTTTCCCAGTTTAGGAGAGGGATGGAGGAAGCTAGCAAGTTTCTTCCTCCGGTTCCTAACCTTGTAACTGCTCTAGATTTAAAGGGAGAACAACCAATCAATACGTTTGGAGAAAACTCCTTTGGAGTGAATGGTACGAAGAATCAAGAGCGCGAAGAGAGAGACAccagagaagaagaagaagaagaagggagaAGCAACAAGCAGTCAGCACTTTCCCTCGTTGATGAGAGTGACTTGTCAGATGCTTTTGATCGGGTGTGTTTAAGTGTGGAAAACGTGTGTAATGAACACAGTTGTTTGCAGAGTGAAGGAGTGAAATTGGAGGAGCCAAATGCAGGGAAGGGTCGTCCTAAGAAACAACGGGGGGAGAAGGAAACAGTAGATTTGAGGAATCTTCTGTTGAGGTGTTCACACTCTGTGTATGCCAATGACAAATGGACTGCCAGTGAATTGCTAAAGCAGATTAGGCAGCACTCTTCTCCCTTAGGGGATGCATCACAGAGGTTGGCTCATTACTTCGCCGATGGCCTCGAGGCGCGCTTGGCTGGTGCACAAGGAATGTTTTCTTTTCTGAGCTCTCAGAGGAGCACTGCTGCTGAGTTTCTCAAGGCACACCATTTTTTTCTATCTGCCACCCCTTTCAAGAAGTTTACATATTTCtctacaaataaaatgattgtGAAAGTAGCTGCCAAGGCAGAAACTGTCCATATTATTGATTTTGGCATCCTATATGGTTTTCAATGGCCAATGCTTATTAAGTCTTTATCAAATAGAGAGGGTGGACCTCCCAAGCTGAGGATCACAGGGATAGATTTTCCCCAACCTGGTTTTCGTCCCACAGAAAGAATTGAGGAGACCGGTCGCCGTCTGGCTAACTATTGTGAGCGTTACAATGTTCCCTTTGAGTACCATGCCAAAGCATCAAGGAACTGGGAAACCATTCAGGTTGAAGCCCTTAAAATTGAGAGCAACGAGCTAGTTGTCGTGAACTCTCTgatgaagtttgaaaatttactGGATGAGACTGTTGAAGTGAACAGTCCTAGAAATGCAGTCCTGGAATTGATCAGGAAGATAAATCCGGATATTTTTACTCAGTGCATCGTTAATGGATCATATAATGCCCCTTTCTTTACCACAAGGTTTAGGGAGGCACTCTTCCATTTTCATACTATTTATGATCTGTGTGACACTGTCGTTCCTCGCGAAAACGAATGGAGGCTGATGATTGAGAGAGAGATTTTGGGCCGGGAGGCTATGAATGTTATAGCATACGAAGGTTCGGAGAGGGTTCACAGGCCTGAGACATACAGACAGTGGCAGATTAGGAATACGAGGGCTGGTTTCAAGCAGCTCCCGCTGAATGAGGAATTAATGGCCAAATTTAGGACTCTATTAAAGGAAGGGTACCACGGAGATTTTGTCTTAGATGAAGATAACAACTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCTTCCACTTGTTGGGTGCCGGCATAG 2151 0.4347 MAMLITVNRAAASVLLLCDCDYKLTQPQFFLLSFSKPLINYGECSCSMNSFMLSLSSHNKNLFQCFRVLRMEANFPGADLFAEEQGIAHLSDSLGFASRDPSLEDNDFSETAKFISQVLMEESVEQRPFYDSLSLQVTEKSFYDALTGNNNENSRQLRLPSPHSVSVSASAFQFNPHALSQPPPSITASHGLSGLDSSIAKLLAQNMCSDADSVSQFRRGMEEASKFLPPVPNLVTALDLKGEQPINTFGENSFGVNGTKNQEREERDTREEEEEEGRSNKQSALSLVDESDLSDAFDRVCLSVENVCNEHSCLQSEGVKLEEPNAGKGRPKKQRGEKETVDLRNLLLRCSHSVYANDKWTASELLKQIRQHSSPLGDASQRLAHYFADGLEARLAGAQGMFSFLSSQRSTAAEFLKAHHFFLSATPFKKFTYFSTNKMIVKVAAKAETVHIIDFGILYGFQWPMLIKSLSNREGGPPKLRITGIDFPQPGFRPTERIEETGRRLANYCERYNVPFEYHAKASRNWETIQVEALKIESNELVVVNSLMKFENLLDETVEVNSPRNAVLELIRKINPDIFTQCIVNGSYNAPFFTTRFREALFHFHTIYDLCDTVVPRENEWRLMIEREILGREAMNVIAYEGSERVHRPETYRQWQIRNTRAGFKQLPLNEELMAKFRTLLKEGYHGDFVLDEDNNWMLQGWKGRILYASTCWVPA 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2645 716 Coils Coil 256 276 - -
Ssu3g2645 716 Pfam GRAS domain family 343 713 IPR005202 -
Ssu3g2645 716 MobiDBLite consensus disorder prediction 246 287 - -
Ssu3g2645 716 MobiDBLite consensus disorder prediction 260 280 - -
Ssu3g2645 716 MobiDBLite consensus disorder prediction 323 338 - -
Ssu3g2645 716 MobiDBLite consensus disorder prediction 316 338 - -
Ssu3g2645 716 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 98 715 - -
Ssu3g2645 716 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 98 715 IPR005202 -
Ssu3g2645 716 ProSiteProfiles GRAS family profile. 334 714 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2645 Ssu-Chr3 80071729 80073879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2645 113 716 GRAS Transcription Factor Family AT1G07530 45.906 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g2645 GRAS 1.1e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2645 - - gmx:100815586 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2645 3 80071729 80073879 Ssu8g0449 8 7128621 7130126 PCT