Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2644 ATGGAGTCAAACTTTCTCGGAGCTGACCTGTTTGGTGAAGAAGAGGAGAGCATATTCTATGTGTCCGACTCGCTTGGTTTTGCACCGACGGATCCTTCGTTCAGGGATCCTTCGCTGGAAGACAACGACTTCTCTGAAACTGCAAAGTTCATAAGCCAGATCCTCATGGAAGAGAACGTTGAACAGAGGCCATTCTATGACTCTCTCACCCTGCAAGTTACCGAGAAATCCTTCTACGATGCTCTCACAGGCAACCTACCTCTTTCCCCCAATCAACACACCCTTGTTCTCAGTCCCGAAGCTGAAATCACCACCaccagcagcagcagcagcagcagcaaccACAACTTCTCAGATGAAAATTCTCGTGAGTTGAAGCTCCCTTCTCAAGATTCTGTTTCTGTTTCTGTTTCCGCTGTTCAGTTTAACCCCCACGCCCTTTCTCAACCACCATCAATTACCGTGAGTCATGGACTCTCAGATTTCGATTCTTCTGTTGCCAAACTCTTGGTACAGAATTTGTTCAATGATGCTGATTCCGTTTCCCAGTTTAGGAAAGGGTTAGAGGAAGCTAGCAAGTTTCTTCCTCCGGGACCTTACCTTCTAACTGGTCTAGATTCAAACGGAGAACAACCAATCAATAGGTTTGAGGAGAATTCCTATGGAGTGAATGGTAGGAAGAATCACGAGCGCAAAGAGAGAGACAccagagaagaagaagaagaagggagaAGTAACAAGCAGTCAGCACTTTCCATTGTTGATGAGAGTGACTTGTCAGATGCTATTGATCGGGTGTTTGTAAGTGTGGAAAACGTGTGTAATGAACACAGTTGTTTGCAGAGTGGAGCAGTGAAAGTTGAAGGGCCAGATGGAGGGAAGGGTCGTACTAAGAGACAAGGGAGGAAGAAGGAAACAGTGGATTTGAGGAATCTTCTGCTGATGTGTTCACAATCTGTGTATGCCAATGACAACAGGACTGCCAATAAATTGCTAAAGCAGATTAGGCAGCACTCTTCTCCCTCTGGGGATGCATCACAGAGATTGGCTCATTACTTCGCCGATGGCCTTGAGGCACGCTTGCTTGGGGATGGTACAGGTGCACAAGGAATATTTCCTTTACTCAGCTCCAAGAACATCACCGCTGCTGAGTTTCTCAAGGCATACCAAGTTTTTCTATCTGCCATCCCTTTCAAgaattttacatatttcttcGCAAGTAAAATGATTATGAAAGCAGCTGCCAAGGCAGAAACCGTCCATGTTATTGATTTTGGCATCCTATATGGTTTCCAGTGGCCAATTcttattaagtttttatcaaatagagAAGGTGGACCTCCCAAGCTGAGGATCACGGGGATAGAGTTTCCCCAACCTGGCTTTCGTCCCACGGAAAGAATTGAGGAGACCGGTCGCCGTCTTGCTAACTATTGTAAGCGTTACAATGTTCCCTTCGAGTACCATGCCATAGCATCAAGGAACTGGGAAACCATTCAGGTTGAAGCCTTTCAAATTGAGAGCAACGAGCTAGTTGCTGTCAACTGTCACATGAGGTTTGAAAATTTACTGGATGAGACTACTATCGAAGTGAACAGTCCTAGAAATGCTGTCCTGCATTTGATCAGGAAGATAAATCCGGATATTTTTACACAGATCATTATTAATGGATCATATAATGCCCCTTTCTTTACCACACGGTTTAGGGAGGCACTGTTCCATTATTCTACTGTTTATGATATGCTTGACACCGTCATACCTCGTGAAAACGAATGGAGGATGATGATTGAGAGAGAGATTTTGGGCCGGGAGGCTATGAATGTTATAGCATGTGAAGGTTCTGAGAGGGTTCAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGGGTAGAAGGGCTGGTTTCAAGCAGCTCCCACTGAATAAGGAATTAATGGCCAAATTTAAGACTAAGTTAAGGGGAGGGTACCACAGAGATTTTGTCTTTGATGAAGATAACAACTGGATGATTCAAGGTTGGAAGGGCCGCATTTTTAATGCTTCCACTTGTTGGGTGCCGGCATAA 2064 0.4307 MESNFLGADLFGEEEESIFYVSDSLGFAPTDPSFRDPSLEDNDFSETAKFISQILMEENVEQRPFYDSLTLQVTEKSFYDALTGNLPLSPNQHTLVLSPEAEITTTSSSSSSSNHNFSDENSRELKLPSQDSVSVSVSAVQFNPHALSQPPSITVSHGLSDFDSSVAKLLVQNLFNDADSVSQFRKGLEEASKFLPPGPYLLTGLDSNGEQPINRFEENSYGVNGRKNHERKERDTREEEEEGRSNKQSALSIVDESDLSDAIDRVFVSVENVCNEHSCLQSGAVKVEGPDGGKGRTKRQGRKKETVDLRNLLLMCSQSVYANDNRTANKLLKQIRQHSSPSGDASQRLAHYFADGLEARLLGDGTGAQGIFPLLSSKNITAAEFLKAYQVFLSAIPFKNFTYFFASKMIMKAAAKAETVHVIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGFRPTERIEETGRRLANYCKRYNVPFEYHAIASRNWETIQVEAFQIESNELVAVNCHMRFENLLDETTIEVNSPRNAVLHLIRKINPDIFTQIIINGSYNAPFFTTRFREALFHYSTVYDMLDTVIPRENEWRMMIEREILGREAMNVIACEGSERVQRPETYKQWQVRGRRAGFKQLPLNKELMAKFKTKLRGGYHRDFVFDEDNNWMIQGWKGRIFNASTCWVPA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2644 687 MobiDBLite consensus disorder prediction 222 246 - -
Ssu3g2644 687 MobiDBLite consensus disorder prediction 101 130 - -
Ssu3g2644 687 MobiDBLite consensus disorder prediction 206 253 - -
Ssu3g2644 687 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 28 686 IPR005202 -
Ssu3g2644 687 MobiDBLite consensus disorder prediction 101 118 - -
Ssu3g2644 687 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 28 686 - -
Ssu3g2644 687 Pfam GRAS domain family 309 684 IPR005202 -
Ssu3g2644 687 ProSiteProfiles GRAS family profile. 300 685 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2644 Ssu-Chr3 80062403 80064466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2644 49 687 GRAS Transcription Factor Family AT1G07530 48.196 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g2644 GRAS 8.7e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2644 - - gmx:100795855 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0449 8 7128621 7130126 Ssu3g2644 3 80062403 80064466 PCT
Ssu3g2644 3 80062403 80064466 Ssu8g0450 8 7145915 7148328 PCT