Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2643 ATGGAGGCGAACTTTCCCGGAGTTGACCCGTTTGGTGAAGACGAGACATTACTGTATGTCTCCGACTCGCTTGGTTTCGCAGCGACGGATCCTTCGTCGAGGGATCCTTCGCAGGAAGACAACGACTTCGCAGAAACTGCAAAGTTCATAGGCCAGATCCTCATGGAAGAGAACGTCGAACAGAGACCATTCTATGACTCACTTTCCTTGCAAGTCACCGAGCAATCCTTCTACGATGCTCTCACCGGAAACCTACCTCTTTCCCCCAATCAACATCCTCTTGTTTTCAGTCCCGAAGCTGAAACCGCCACCAGTAGCAGCAGCAGCAGCGACAACAGAAACAACAATTTCTCAGATGAAAATTCTCGTGAGTTGAAGCTCCCTTCTCCAGATTCTGTTTCTGTTCCCGCTTTTCAGTTTAACCCTTACGCCGTTTCTCAGCCACCACCTTCGATTGCCGTAAGTGATGGATTCTCAGATTTGGATTCTTCTATTGCCAAACTGTTGGCACAAAATATGTTCGACGATGCTGATTCCGTTTCCCAATTTAGGAGAGGGATGGAGGAAGCTAGCAAGTTTCTTCCTCCGGGGCCTAACCTTCTGACTGGTCTAGATTCAAACGGAGAACAGCCAATCAATATGTTTGGAGAGAATTCCTATGGAGTGAAGGGTAGGAAGAATCATGAGCGCGAAGAGAGAGACAccggagaagaagaagaagggagaAGTAACAAGCAATCGGCACTTGCCCTTGCTGATGAGAGTGACTTGTCAGATGCTTTTGATCGGGTGTTGCTAAACGTGGGAAACGTGTGTAATGAACACAGTCGTTTGCCGAGTGGAGCAGCGAAAGTTGAAGAGCCAGATGGAGGGAAGGGTCGTACTAAGAGACAAGGGAGGAAGAAGGAAACAGTGGATTTGAGGAATCTTCTGCTGATGTGTTCACAATCTGTGTTTGCCAATGACAACAGGACTGCCTATGAATTGCTAAGGCAGATTAGGCAGCACTCTTCTCCCTCTGGGGATGCATCACAGAGGTTGGCTCATTACTTCGCCAATGGCCTCGGGGCACGCTTGGTTGGGGATGGTACAGCTGCACAAGGATGTTTTTCTTTGCTCAGCACTAAGATCACTGCTGCTGAGTTTCTCAAGGTGTACCAGGTTTTCCTATCAGCCAGCCCTTTCAAGAAGTTTACATATTTCTTtgcaaataaaatgattatgaaGGCAGCTGCAAAGGCAGAAACTGTCCATGTTATTGATTTTGGCATCCTATATGGTTTCCAGTGGCCAATTcttattaagtttttatcaaatagagAGGGTGGACCTCCCAAGCTGAGGATCACGGGGATAGAGTTTCCCCAACCTGGCTTTCGTCCCACGGAAAGAAATGAGGAGACTGGTCGCCGTCTTGCTAACTATTGTAAGCGTTACAATGTTCCCTTTGAGTACAATGCCATAGCATCGCGGAACTGGGAAACAATTCAGGTGGAAGCCCTTAAAATTCAGAGCAACGAGCTAGTTGCTGTCAACTGTCACATGAGCATGTATGCTGCAATGGTGAAGCTTAATTTGCTCGTTAAATTGTTTCAGGTTCTGGTATCTTTGGTCTGGCGAGCTACTTGCTTAACCTTCAGGTGCTGTGATGAAGATTGTACCAAGCTTTTGCACCAAGTTACTTGGTACAATTATGGAACGACTTTTCTGGATACGTCGTCTCTTGAGCCAAATTAG 1737 0.4548 MEANFPGVDPFGEDETLLYVSDSLGFAATDPSSRDPSQEDNDFAETAKFIGQILMEENVEQRPFYDSLSLQVTEQSFYDALTGNLPLSPNQHPLVFSPEAETATSSSSSSDNRNNNFSDENSRELKLPSPDSVSVPAFQFNPYAVSQPPPSIAVSDGFSDLDSSIAKLLAQNMFDDADSVSQFRRGMEEASKFLPPGPNLLTGLDSNGEQPINMFGENSYGVKGRKNHEREERDTGEEEEGRSNKQSALALADESDLSDAFDRVLLNVGNVCNEHSRLPSGAAKVEEPDGGKGRTKRQGRKKETVDLRNLLLMCSQSVFANDNRTAYELLRQIRQHSSPSGDASQRLAHYFANGLGARLVGDGTAAQGCFSLLSTKITAAEFLKVYQVFLSASPFKKFTYFFANKMIMKAAAKAETVHVIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGFRPTERNEETGRRLANYCKRYNVPFEYNAIASRNWETIQVEALKIQSNELVAVNCHMSMYAAMVKLNLLVKLFQVLVSLVWRATCLTFRCCDEDCTKLLHQVTWYNYGTTFLDTSSLEPN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2643 578 MobiDBLite consensus disorder prediction 89 130 - -
Ssu3g2643 578 MobiDBLite consensus disorder prediction 216 251 - -
Ssu3g2643 578 ProSiteProfiles GRAS family profile. 298 578 IPR005202 -
Ssu3g2643 578 MobiDBLite consensus disorder prediction 279 300 - -
Ssu3g2643 578 MobiDBLite consensus disorder prediction 89 116 - -
Ssu3g2643 578 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 27 516 - -
Ssu3g2643 578 MobiDBLite consensus disorder prediction 222 244 - -
Ssu3g2643 578 Pfam GRAS domain family 307 553 IPR005202 -
Ssu3g2643 578 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 516 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2643 Ssu-Chr3 80053580 80056167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2643 48 512 GRAS Transcription Factor Family AT1G07530 43.487 5.22e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g2643 GRAS 1e-61 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2643 - - gmx:100795855 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0450 8 7145915 7148328 Ssu3g2643 3 80053580 80056167 PCT