Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2642 ATGGATCCCCATTTCAAGTCCAATTTCACCAATGGTGTTAAACTCAACCAAGTGCCCTACACGGTCGATGTGGAGGATCAGTGCCTTGACCCTGTAAATGGGATGGTGAAACCCTTTGAATTTGGATTCATGGATAACCCGTTTCTTCTTCCATCTGATCCAAACGCTGCTCAAAATCCTGTTTCCCTGTCCACCGATGAAGACTCTCCCTTGGATGAGGCTGATTTTTCTGCCACTGTCCTACGCTACATAAACCAAATGCTTATGGAAGAGGATTTGGAGGAGAAGCCGTGTATGTTCCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGAGGTTATTGGTGGGACATACCCTTCTTATACCTCCATCCAAAACTATCACAACGTGGACAGCCCTGATGACAGTAACTTGAGTGGTTATGGAAGTAGTGGTACAACTAGCACTAATAACTCGGTTGAGTCCCACTGGAGTAATGTTGATCTTACTGACTACAAGCCTTCCATACTGCAAACCACGTTTCCTACTGACTTTGTTTTCCAGGCCAGTTCAATCCCATCTTCTGTGAACACCACAAGCAACTTCGCTGTAACTGATAGTGGATTCTTGGCAAGTTCTGCGGCTGGATTTTTAGATCCAGGTTCAACCTTGTTTAGCAAGAGTGAATCTGTGCTGCAATTTGAGAGGGGTGTGGAGGAAGCCAGTAAGTTCCTACCTAAAGAGAATCCATTGGTTATTGACTTGGAGAATCCCTCGTTTCAAAAGATTCCTCCTCAGCAGGTGGTAATTAAGGCGGAGAGGGATGAAATTTCTGCCGAGTCAAGAGGGAGGAAGAATCATGAGCGGGAAGATGAAGAAGCGGATTTACAAGATGGGAGAAGCAGCAAGCAGTCAGCTGTGTACAGTGATGACAGTGAGATATCGGAATTGCTTGATAAGGTGCTGCTGGGCGTGAGGTGGGGAAATGAGGCAGCCCCTGTGTGTATTTGTTACGCCGACCTTCCTAATGGACCATCCTTGGGTAAATTAGAAGAAACAAACAAGTCCAGTGGTGGAAAGAGCCGTGTTAAGAAACAAGGCAACAAGAAGGGAGTTGTGGATCTGAGGACACTGTTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGTGCAACTGCTAATGAGTTATTAAAGCAGATGAGGCAACATTCTTCTCCACTGGGTGATGGGACTCAGAGACTGGCCCATTGCCTTGCAAATGCCCTTGATGCACGTTTGGCTGGCACCGGCACTCAGATTTATACTGCTTTATCACACAAAAAAACCTCTGCGGCAGACATGGTGAAAGCTTACCAGATGTATATTTCAGCCTGCCATTCAAGAAGCTTGCAATTATCTTTGCAAACCATACAATTTTGCATCTAG 1416 0.4548 MDPHFKSNFTNGVKLNQVPYTVDVEDQCLDPVNGMVKPFEFGFMDNPFLLPSDPNAAQNPVSLSTDEDSPLDEADFSATVLRYINQMLMEEDLEEKPCMFHDSLALQAAEKSFYEVIGGTYPSYTSIQNYHNVDSPDDSNLSGYGSSGTTSTNNSVESHWSNVDLTDYKPSILQTTFPTDFVFQASSIPSSVNTTSNFAVTDSGFLASSAAGFLDPGSTLFSKSESVLQFERGVEEASKFLPKENPLVIDLENPSFQKIPPQQVVIKAERDEISAESRGRKNHEREDEEADLQDGRSSKQSAVYSDDSEISELLDKVLLGVRWGNEAAPVCICYADLPNGPSLGKLEETNKSSGGKSRVKKQGNKKGVVDLRTLLILCAQAVSSDDRATANELLKQMRQHSSPLGDGTQRLAHCLANALDARLAGTGTQIYTALSHKKTSAADMVKAYQMYISACHSRSLQLSLQTIQFCI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2642 471 MobiDBLite consensus disorder prediction 270 304 - -
Ssu3g2642 471 MobiDBLite consensus disorder prediction 343 364 - -
Ssu3g2642 471 MobiDBLite consensus disorder prediction 270 295 - -
Ssu3g2642 471 ProSiteProfiles GRAS family profile. 362 471 IPR005202 -
Ssu3g2642 471 PANTHER SCARECROW-LIKE PROTEIN 14 46 456 - -
Ssu3g2642 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 456 IPR005202 -
Ssu3g2642 471 Coils Coil 467 471 - -
Ssu3g2642 471 Pfam GRAS domain family 371 455 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2642 Ssu-Chr3 80038460 80039875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2642 80 455 GRAS Transcription Factor Family AT1G07530 47.666 3.77e-96 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g2642 GRAS 5.2e-16 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2642 - - gmx:100815586 729.939