Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2636 atggccGTGGCCAATGTGCTCTGCATTGCGTTCATTATCTCCTTAACGTGGGTGGTGGAAGCTCGAATTCCAGGGGTTTACTCTGGTGGTGCATGGGAAAGTGCTCACGCCACATTCTACGGAGGATCCGATGCTTCCGGCACCATGGGGGGAGCGTGTGGGTATGGGAACCTGTACAGCCAAGGGTACGGTGTGAACACAGCGGCATTGAGCACGGCACTTTTCAACAACGGTCTTAGCTGCGGTGCGTGTTTTGAGATAAAGTGCGCAAACGACAGGCAGTGGTGTCACTCGGGCAGTCCTTCCATCTTCATCACCGCAACAAACTTTTGCCCTCCGAACTACGCTCTCCCAAACGACAATGGCGGCTGGTGCAACCCTCCTCGTCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAGATTGCCGAATACCGCGCCGGAATCGTCCCCGTTGCTTATCGCCGGGTGCCATGCAGGAAGCCCGGAGGGATAAGGTTCACGATTAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTGGCGGGTGCGGGGGATATCGTGCGCACCTACGTGAAGGGGTCCCGAACCGGGTGGATACCAATGAGCCGAAACTGGGGACAGAACTGGCAGTCAAACGCGGTTTTGGTGGGCCAGGCACTGTCCTTCCGCGTCACGGGCGGCGACCGCCGCACCTCCACCTCGTGGAACATTGCTCCACCTCACTGGCAATTCGGTCAAACTTTCGCCGGAAAGAATTTCCGGGTCTGA 777 0.5663 MAVANVLCIAFIISLTWVVEARIPGVYSGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKPGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWIPMSRNWGQNWQSNAVLVGQALSFRVTGGDRRTSTSWNIAPPHWQFGQTFAGKNFRV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2636 258 PANTHER EXPANSIN-A15 4 257 IPR002963 GO:0009664
Ssu3g2636 258 SUPERFAMILY PHL pollen allergen 161 252 IPR036749 -
Ssu3g2636 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Ssu3g2636 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Ssu3g2636 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Ssu3g2636 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Ssu3g2636 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Ssu3g2636 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Ssu3g2636 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Ssu3g2636 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Ssu3g2636 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Ssu3g2636 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Ssu3g2636 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Ssu3g2636 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Ssu3g2636 258 PANTHER EXPANSIN 4 257 - -
Ssu3g2636 258 SMART dpbb_1 67 154 IPR007112 -
Ssu3g2636 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Ssu3g2636 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Ssu3g2636 258 Gene3D - 164 256 IPR036749 -
Ssu3g2636 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Ssu3g2636 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Ssu3g2636 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Ssu3g2636 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Ssu3g2636 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Ssu3g2636 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Ssu3g2636 258 Gene3D - 19 160 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2636 Ssu-Chr3 79943312 79945672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2636 18 258 Expansin Gene Family AT2G39700 86.722 3.54e-160 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2636 - - gmx:100809139 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2636 3 79943312 79945672 Ssu3g2636 3 79943312 79945672 ECH
Ssu3g2636 3 79943312 79945672 Ssu6g2924 6 67389356 67392030 ECH
Ssu8g0455 8 7215068 7216179 Ssu3g2636 3 79943312 79945672 ECH
Ssu3g1304 3 32363656 32368062 Ssu3g2636 3 79943312 79945672 ECH
Ssu8g0455 8 7215068 7216179 Ssu3g2636 3 79943312 79945672 PCT