Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2635 ATGAAGTGCTTCTATTTCTCAAACGGAGAAGACGAAGATTGCGTAGCGGCGCCGAGTTCGCGCGGTTCGCGCGTGTCATGGGCGCGCTCCCTGAGCCTGATGGACACGCGGAGCAGGTCCCAGTTTGACTCGGAGTCAACGGACTTCTCCGACACCCTCGACTTCCACCACTTCCTCGCGCGGCGCCGCGCCAACGACCTCCGCCTCTTCTCCTTCTCCGACCTCAAGTCCGCCACGCGCAGCTTCAGCCGCGCCCTCCTCGTTGGCGAGGGCGGCTTCGGCTCCGTCTACCGCGGCCTCCTCGACCTCCGGGAGCCTTCCCCCTTGCAGATCGTCGACGTCGCCGTCAAGCAGCTGAACCGCAACGGCCACCAGGGCCACAAGGAGTGGATCAACGAGGTGAATTTGTTGGGCGTGGTGAAGCACCCCAATCTGGTGCGGTTGGTGGGGTACTGCGCCGAAGACGACGAAAGAGGGATTCAGAGGCTTTTGGTTTACGAGTTTATGCCGAACAAGAGCTTGGAGGACCATCTTCTGGCGCGGGTGCCTTCGTCGGTGCTGCCTTGGGGGACCAGGTTGAAAATCGCGCAAGATGCGGCTCGTGGCTTGGCGTATCTTCATGAAGAAATGGATTTTCAGCTAATATTTCGAGATTTTAAGACGTCCAACATCTTGCTGGACGAGAATTTCAATGCAAAGCTTTCTGATTTTGGACTGGCTAGGCAAGGACCCTCAGAAGGGTTTGGCTATGTTTCAACAGCAGTTGTCGGCACCATAGGTTATGCTGCACCAGAGTATGTTCAGACTGGTAAGCTGACTGCTAAGAGTGATGTCTGGAGCTTTGGTGTAGTTCTTTATGAGCTTATCACTGGGAGGAGAGCTGTAGAGAGAAACCTACCAAGAAATGAACAAAAGCTTTTGGAGTGGGTAAGACCTTATGTTTCTGATCCTAGGAAGTTCCATCATATTGTAGACCCCCGACTTGAAGGACAATATTGCATCAAATCAGCTCATAAACTTGCAATCCTAGCAAACAAGTGCCTCATGAAGCAGCCAAAGTCCCGTCCAAAAATGAGTGAGGTGATTGAGTCTCTTGGAAGCATTATTAATGAGACAGTTCCTCAGGATGAATACATCCCTCAAGCTGCTGTAGCAACTGGAGAAGAAAAGATATCTGTAGAGGACACTGAACGTGAACCAGCTAAACAAGGGAACAATTACCTGAAGAAGGTTTTTGAATTCAGAGACATGGTCAGCTTAAGAAATAAGTCTACTGGAAGGTTGGATTGGAAAAGTTGGGCGCCTGGGCTAGTAAGAACTTTGTGA 1326 0.5166 MKCFYFSNGEDEDCVAAPSSRGSRVSWARSLSLMDTRSRSQFDSESTDFSDTLDFHHFLARRRANDLRLFSFSDLKSATRSFSRALLVGEGGFGSVYRGLLDLREPSPLQIVDVAVKQLNRNGHQGHKEWINEVNLLGVVKHPNLVRLVGYCAEDDERGIQRLLVYEFMPNKSLEDHLLARVPSSVLPWGTRLKIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDENFNAKLSDFGLARQGPSEGFGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQKLLEWVRPYVSDPRKFHHIVDPRLEGQYCIKSAHKLAILANKCLMKQPKSRPKMSEVIESLGSIINETVPQDEYIPQAAVATGEEKISVEDTEREPAKQGNNYLKKVFEFRDMVSLRNKSTGRLDWKSWAPGLVRTL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2635 441 CDD STKc_IRAK 88 368 - -
Ssu3g2635 441 ProSiteProfiles Protein kinase domain profile. 82 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2635 441 PANTHER OS01G0588500 PROTEIN-RELATED 34 389 - -
Ssu3g2635 441 SUPERFAMILY Protein kinase-like (PK-like) 65 365 IPR011009 -
Ssu3g2635 441 Gene3D Transferase(Phosphotransferase) domain 1 169 385 - -
Ssu3g2635 441 Gene3D Phosphorylase Kinase; domain 1 62 168 - -
Ssu3g2635 441 Pfam Protein tyrosine and serine/threonine kinase 88 365 IPR001245 GO:0004672|GO:0006468
Ssu3g2635 441 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 34 389 - -
Ssu3g2635 441 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2635 Ssu-Chr3 79925837 79928378 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2635 68 402 Glycoside Hydrolase AT3G07070 47.076 2.61e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu3g2635 PK_Tyr_Ser-Thr 6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2635 - - gmx:100811825 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2635 3 79925837 79928378 Ssu3g2635 3 79925837 79928378 ECH