Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2634 ATGCCTTCCTTACATCTCGGCACCCTTAAGTTGTGTCTCTCTCCTCCGGCATTCCCCTGTCCTTCCTTTCTCCTTCTTCCTATATACCCTAACTCAACTTCACTGCAAACAGGCAACAAGGGTCAAGGAATTAGTACTGTTCCTATCATGGGAGTTTGTTTGAGCACCCAAATTAAAGCCGGTAGCCTATCTAACACTGGGTTAAATTCAAAGCATGTGAGTGCCGATGCAAAAGATCTCAGCAGTCCAAGCAGTAAAACTACAAAAGATCTCAACAGTCCAAgtagtaataaaattacaaaagatcTCAGCAGCCCAATTAGTAAGGTCTCAGAGGTTTCGGTGCCTCAGACTCCCCAGAGTGAGGGTGAGATCTTGCACTCATCCAATCTGAAGAGCTTTAGTTTGACAGAACTTACGGCTGCCACAAGAAATTTCCGTACAGATGGTGTGCTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGCTGGATTGATGATCACTCACTGTCTGCTGCCAAACCTGGCACGGGCATTGTTGTTGCTGTGAAAAAACTTGATCACGATAGCTTCCAAGGTCACAAGGATTGGTTGgcAAGGCATGGTATGACTCACGAAGCAAGTCTCGAGGGTGAAGTAAACTATCTAGGCCAGCTTTGTCATCCTCATCTAGTGAAATTAATTGGGTATTGCTTTGAAGATAAAAACCGCCTTCTGGTCTATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGCTCATATTTTCAACCTCTTTCTTGGGGCCTCCGTTTGAAAGTCGCTCTTGGTGCTGCCAAAGGACTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATATCGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCGAATTATAACGCAAAGCTTGCTGATTTGGTGCTGGCAAAGGACGGACCAACACGTGACAAAAATCATGTCTCTACCAGAGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTCAGTGTTAAGAGTGATGTCTTCAGTTTCGGAGTTGTCCTGCTGGAAATGTTATCTGGCAGGCGGGCTGTGGACAAGAACAGACCCTCAGGACAGCACAATTTGGTAGAATGGGCGAAGCCATACTTAGCGAACAAGAGAAAGCTTTTGCGTGTGTTGGATAACCGTCTTGAAGGCCAATATGCATTAGATGAGGCCTATAAGGTGGCTACCCTCTCTCTGCGGTGCCTTGAAACAGAATCCAAGTTGAGACCAAACATGGACGATGTTGTCACAGATTTGGAGCAGCTGCAGGTTCCCCATGTAAATCAAAATCGTTCTGTGAATGTCTCTCGTGTTCGTAGAAAAAGTGCTGATGATGTTACCCATGGTAGAATCGCCAAACCTTATTCCCGGCCCTCAGCTTCCCCGTTCTTACAAGACATTGCAAATACATGTCCTTGA 1482 0.4453 MPSLHLGTLKLCLSPPAFPCPSFLLLPIYPNSTSLQTGNKGQGISTVPIMGVCLSTQIKAGSLSNTGLNSKHVSADAKDLSSPSSKTTKDLNSPSSNKITKDLSSPISKVSEVSVPQTPQSEGEILHSSNLKSFSLTELTAATRNFRTDGVLGEGGFGSVFKGWIDDHSLSAAKPGTGIVVAVKKLDHDSFQGHKDWLARHGMTHEASLEGEVNYLGQLCHPHLVKLIGYCFEDKNRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYRDFKTSNVLLDSNYNAKLADLVLAKDGPTRDKNHVSTRVMGTYGYAAPEYLATGHLSVKSDVFSFGVVLLEMLSGRRAVDKNRPSGQHNLVEWAKPYLANKRKLLRVLDNRLEGQYALDEAYKVATLSLRCLETESKLRPNMDDVVTDLEQLQVPHVNQNRSVNVSRVRRKSADDVTHGRIAKPYSRPSASPFLQDIANTCP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2634 493 Gene3D Phosphorylase Kinase; domain 1 116 243 - -
Ssu3g2634 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Ssu3g2634 493 ProSitePatterns Protein kinases ATP-binding region signature. 152 185 IPR017441 GO:0005524
Ssu3g2634 493 MobiDBLite consensus disorder prediction 74 126 - -
Ssu3g2634 493 Gene3D Transferase(Phosphotransferase) domain 1 244 466 - -
Ssu3g2634 493 Pfam Protein tyrosine and serine/threonine kinase 150 440 IPR001245 GO:0004672|GO:0006468
Ssu3g2634 493 SUPERFAMILY Protein kinase-like (PK-like) 130 448 IPR011009 -
Ssu3g2634 493 ProSiteProfiles Protein kinase domain profile. 146 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2634 493 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 100 457 - -
Ssu3g2634 493 PANTHER OS01G0588500 PROTEIN-RELATED 100 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2634 Ssu-Chr3 79920566 79923795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2634 124 482 Glycoside Hydrolase AT3G07070 44.241 2.18e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu3g2634 PK_Tyr_Ser-Thr 2.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2634 - - gmx:100812366 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2634 3 79920566 79923795 Ssu3g2634 3 79920566 79923795 ECH
Ssu8g0458 8 7250993 7253327 Ssu3g2634 3 79920566 79923795 PCT