Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2630 ATGGAAGCCCAATACTGGCTTGCACGGTGGAAAAGTTGCGGACAAGGTGGAGCAGATCCCTGCAATGGGGTGATTGGGTTTGCTGCAGAATTCCCTGAACTTGCCAAATTTTCATTATCAGATATTCAAAATGCCACATGCAATTTTTCTGAGAGTTTCAAAATTAGGGAGGGTGGATATGGTTCTATTTATAAGGGGGAAATGTTGGGTAGAACAATTGCTATAAGGAAGCTCCATCCACACAACATGCAAGGATCAACAGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTCCGGCACCCTCATATGGTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCACTTGTATATGAGTACTTGCCCAATGGAAGTCTCCAAGACTATCTATTCCGAAAAAGCAGTCTTCTCCCTTTGACTTGGAACATCCGAGCACGATGGATTGCTGAAATTGCTACAGCTCTCTGCTTCTTACATTCTTCCAAACCTGAAACTATTATCCACAGTGGTCTGACGCTTGATACTGTCCTTCTTGACTCTGCACTTAGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTGGTGAAAGAGGAGTCACTTTATCTTCCTAGTTTCCGCTTCAGCACTGAGCCAAAGGGTTCTTTTACATATACAGATCCAGAGTTTCAGAGAACTGGCGTGCTAACACCTAAATCTGACATATACTCTTTTGGGCTCATCATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCTGGTGAAGTGCGCAGAGCTGTTTCATGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGCATTCCACTGTGGCAACACAATTGATTGAACTGGGATTGCAATGCTGCCTACTGAATAGTAGAGACAGACCAGAGTTAACACCTTCTCTGGTAAGAGAATTGGAGCAGTTGCATGTTGCAGAAGAGCGACCACTTCCATCTTTTTTCTTGTGTCCAATCTTCCAGGAAATAATGCACGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAGGGAAGGCCATAAGTGAATGGCTGGAACATGGGCACGAAACATCTCCTAtgactaatttaaaattgagtCACCTGCATCTCACTCCCAATCACGCACTGCGAGTATCTATCCAAGGCTGGCTTTGCAAATCTTga 1182 0.4357 MEAQYWLARWKSCGQGGADPCNGVIGFAAEFPELAKFSLSDIQNATCNFSESFKIREGGYGSIYKGEMLGRTIAIRKLHPHNMQGSTEFHQEVQVLGSLRHPHMVTLLGVCPEAWSLVYEYLPNGSLQDYLFRKSSLLPLTWNIRARWIAEIATALCFLHSSKPETIIHSGLTLDTVLLDSALSCKICEFGFSRLVKEESLYLPSFRFSTEPKGSFTYTDPEFQRTGVLTPKSDIYSFGLIILQLLTGRTPVGLAGEVRRAVSCGKLSSILDSSAGEWHSTVATQLIELGLQCCLLNSRDRPELTPSLVRELEQLHVAEERPLPSFFLCPIFQEIMHDPQVAADGFTYEGKAISEWLEHGHETSPMTNLKLSHLHLTPNHALRVSIQGWLCKS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2630 393 CDD RING-Ubox_WDSUB1_like 327 368 - -
Ssu3g2630 393 SUPERFAMILY Protein kinase-like (PK-like) 33 309 IPR011009 -
Ssu3g2630 393 Gene3D Transferase(Phosphotransferase) domain 1 122 322 - -
Ssu3g2630 393 PANTHER OS10G0100500 PROTEIN 1 392 - -
Ssu3g2630 393 SUPERFAMILY RING/U-box 320 392 - -
Ssu3g2630 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 393 IPR013083 -
Ssu3g2630 393 Gene3D Phosphorylase Kinase; domain 1 26 121 - -
Ssu3g2630 393 Pfam Protein tyrosine and serine/threonine kinase 54 305 IPR001245 GO:0004672|GO:0006468
Ssu3g2630 393 ProSiteProfiles U-box domain profile. 322 393 IPR003613 GO:0004842|GO:0016567
Ssu3g2630 393 PANTHER OS02G0152300 PROTEIN 1 392 - -
Ssu3g2630 393 Pfam U-box domain 324 392 IPR003613 GO:0004842|GO:0016567
Ssu3g2630 393 SMART Ubox_2 326 389 IPR003613 GO:0004842|GO:0016567
Ssu3g2630 393 ProSiteProfiles Protein kinase domain profile. 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2630 Ssu-Chr3 79881529 79885005 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2630 37 390 U-box Gene Family AT2G45910 47.814 3.69e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu3g2630 PK_Tyr_Ser-Thr 6.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2630 - - gmx:100799032 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2630 3 79881529 79885005 Ssu3g2630 3 79881529 79885005 ECH
Ssu8g0466 8 7320386 7321221 Ssu3g2630 3 79881529 79885005 PCT